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F6FPL5 (F6FPL5_ISOV2) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 13. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Isova_2011 EMBL AEG44747.1
OrganismIsoptericola variabilis (strain 225) [Complete proteome] [HAMAP]
Taxonomic identifier743718 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeActinomycetalesMicrococcineaePromicromonosporaceaeIsoptericola

Protein attributes

Sequence length853 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
F6FPL5 [UniParc].

Last modified July 27, 2011. Version 1.
Checksum: 9985F73338F31E92

FASTA85394,862
        10         20         30         40         50         60 
MARSSASGGT TKQTVSVEGH RLQLTNLDKV LYPATGTTKG EVLHYLAEIA PVLIPHAANR 

        70         80         90        100        110        120 
PATRKRWPDG VDGQVFFQKN ADKSTPSWVR TRRIEHKTSA NDYVLVNDLA TLTWLGQTAT 

       130        140        150        160        170        180 
LEVHVPQWQF GRTGVRHNPD RLVLDLDPGP GAGLPECAQV ARWARAILVG MGLEPMPVTS 

       190        200        210        220        230        240 
GSKGIHLYAA LDGKQDSEQV SAVAKELARY LESEHPDLVV SDMKKSLRGG KVLVDWSQNN 

       250        260        270        280        290        300 
GNKTTIAPYS LRGRDHPTVA APRTWDELDD PDLRHLEYPE VLERVARDGD LLADLTQGHL 

       310        320        330        340        350        360 
AALEPTPEHM ARFERLEVYR SKRDPDKTPE PFGPSSPAAD APPGDTRPTF VIQEHHARRL 

       370        380        390        400        410        420 
HWDFRLEHDG VLVSWALPKG EPTDPAKNHL AVQTEDHPLE YGSFEGTIPA GEYGAGEVTI 

       430        440        450        460        470        480 
WDAGTYDLEK WVDGKEVIVT LHSERRGSRR LALIQTGGRD GDENSWLIHR TKEQPGGAGP 

       490        500        510        520        530        540 
AEEPATGRDG PGRRPRSGTA RRAPVELPDR PMLATAATQR ELRGLDAAEW AFEMKWDGFR 

       550        560        570        580        590        600 
TLATVTMPDD GTRGGEPSVR LTSRTGLDMT KTYPELQALA GMLSPDDLPA VLDGEIVALD 

       610        620        630        640        650        660 
ARGRPEFRRL QQRANLQKKG DVEAARRRVK VDLMLFDVLA LAGETLTDRT YDERRRLLER 

       670        680        690        700        710        720 
TVRPARPVHV PPAFDGDLEA ATDTSRELRL EGILAKRRSS RYAPGRRSRE WLKLKHSRMQ 

       730        740        750        760        770        780 
EVVVVGWRPL HAGEAREDDR TMGSLLLALP APQHGDGALR YVGKVGTGFR EKERTQIATR 

       790        800        810        820        830        840 
LRGIERATPP VDGVPRAEAR HARWVTPRLV GEVEYGDWTA DPTDPDLVDE ARLRHATWRG 

       850 
WREDKAPADV RPE 

« Hide

References

[1]"Complete sequence of Isoptericola variabilis 225."
US DOE Joint Genome Institute
Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Mikhailova N., Zeytun A., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Siebers A., Allgaier M. expand/collapse author list , Thelen M., Hugenholtz P., Gladden J., Woyke T.
Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 225.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002810 Genomic DNA. Translation: AEG44747.1.
RefSeqYP_004542641.1. NC_015588.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEG44747; AEG44747; Isova_2011.
GeneID10733636.
KEGGiva:Isova_2011.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycIVAR743718:GI39-2048-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF6FPL5_ISOV2
AccessionPrimary (citable) accession number: F6FPL5
Entry history
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: April 16, 2014
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)