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Protein
Submitted name:

DNA polymerase LigD, polymerase domain protein

Gene

Isova_2011

Organism
Isoptericola variabilis (strain 225)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciIVAR743718:GI39-2048-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, polymerase domain proteinImported
Gene namesi
Ordered Locus Names:Isova_2011Imported
OrganismiIsoptericola variabilis (strain 225)Imported
Taxonomic identifieri743718 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaMicrococcalesPromicromonosporaceaeIsoptericola
ProteomesiUP000009236 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi743718.Isova_2011.

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F6FPL5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MARSSASGGT TKQTVSVEGH RLQLTNLDKV LYPATGTTKG EVLHYLAEIA
60 70 80 90 100
PVLIPHAANR PATRKRWPDG VDGQVFFQKN ADKSTPSWVR TRRIEHKTSA
110 120 130 140 150
NDYVLVNDLA TLTWLGQTAT LEVHVPQWQF GRTGVRHNPD RLVLDLDPGP
160 170 180 190 200
GAGLPECAQV ARWARAILVG MGLEPMPVTS GSKGIHLYAA LDGKQDSEQV
210 220 230 240 250
SAVAKELARY LESEHPDLVV SDMKKSLRGG KVLVDWSQNN GNKTTIAPYS
260 270 280 290 300
LRGRDHPTVA APRTWDELDD PDLRHLEYPE VLERVARDGD LLADLTQGHL
310 320 330 340 350
AALEPTPEHM ARFERLEVYR SKRDPDKTPE PFGPSSPAAD APPGDTRPTF
360 370 380 390 400
VIQEHHARRL HWDFRLEHDG VLVSWALPKG EPTDPAKNHL AVQTEDHPLE
410 420 430 440 450
YGSFEGTIPA GEYGAGEVTI WDAGTYDLEK WVDGKEVIVT LHSERRGSRR
460 470 480 490 500
LALIQTGGRD GDENSWLIHR TKEQPGGAGP AEEPATGRDG PGRRPRSGTA
510 520 530 540 550
RRAPVELPDR PMLATAATQR ELRGLDAAEW AFEMKWDGFR TLATVTMPDD
560 570 580 590 600
GTRGGEPSVR LTSRTGLDMT KTYPELQALA GMLSPDDLPA VLDGEIVALD
610 620 630 640 650
ARGRPEFRRL QQRANLQKKG DVEAARRRVK VDLMLFDVLA LAGETLTDRT
660 670 680 690 700
YDERRRLLER TVRPARPVHV PPAFDGDLEA ATDTSRELRL EGILAKRRSS
710 720 730 740 750
RYAPGRRSRE WLKLKHSRMQ EVVVVGWRPL HAGEAREDDR TMGSLLLALP
760 770 780 790 800
APQHGDGALR YVGKVGTGFR EKERTQIATR LRGIERATPP VDGVPRAEAR
810 820 830 840 850
HARWVTPRLV GEVEYGDWTA DPTDPDLVDE ARLRHATWRG WREDKAPADV

RPE
Length:853
Mass (Da):94,862
Last modified:July 27, 2011 - v1
Checksum:i9985F73338F31E92
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002810 Genomic DNA. Translation: AEG44747.1.
RefSeqiWP_013839138.1. NC_015588.1.
YP_004542641.1. NC_015588.1.

Genome annotation databases

EnsemblBacteriaiAEG44747; AEG44747; Isova_2011.
KEGGiiva:Isova_2011.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002810 Genomic DNA. Translation: AEG44747.1.
RefSeqiWP_013839138.1. NC_015588.1.
YP_004542641.1. NC_015588.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi743718.Isova_2011.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEG44747; AEG44747; Isova_2011.
KEGGiiva:Isova_2011.

Phylogenomic databases

KOiK01971.

Enzyme and pathway databases

BioCyciIVAR743718:GI39-2048-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 225Imported.

Entry informationi

Entry nameiF6FPL5_ISOV2
AccessioniPrimary (citable) accession number: F6FPL5
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: June 24, 2015
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.