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F6FPL5

- F6FPL5_ISOV2

UniProt

F6FPL5 - F6FPL5_ISOV2

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Protein
Submitted name: DNA polymerase LigD, polymerase domain protein
Gene
Isova_2011
Organism
Isoptericola variabilis (strain 225)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciIVAR743718:GI39-2048-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, polymerase domain proteinImported
Gene namesi
Ordered Locus Names:Isova_2011Imported
OrganismiIsoptericola variabilis (strain 225)
Taxonomic identifieri743718 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesMicrococcineaePromicromonosporaceaeIsoptericola
ProteomesiUP000009236: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F6FPL5-1 [UniParc]FASTAAdd to Basket

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MARSSASGGT TKQTVSVEGH RLQLTNLDKV LYPATGTTKG EVLHYLAEIA    50
PVLIPHAANR PATRKRWPDG VDGQVFFQKN ADKSTPSWVR TRRIEHKTSA 100
NDYVLVNDLA TLTWLGQTAT LEVHVPQWQF GRTGVRHNPD RLVLDLDPGP 150
GAGLPECAQV ARWARAILVG MGLEPMPVTS GSKGIHLYAA LDGKQDSEQV 200
SAVAKELARY LESEHPDLVV SDMKKSLRGG KVLVDWSQNN GNKTTIAPYS 250
LRGRDHPTVA APRTWDELDD PDLRHLEYPE VLERVARDGD LLADLTQGHL 300
AALEPTPEHM ARFERLEVYR SKRDPDKTPE PFGPSSPAAD APPGDTRPTF 350
VIQEHHARRL HWDFRLEHDG VLVSWALPKG EPTDPAKNHL AVQTEDHPLE 400
YGSFEGTIPA GEYGAGEVTI WDAGTYDLEK WVDGKEVIVT LHSERRGSRR 450
LALIQTGGRD GDENSWLIHR TKEQPGGAGP AEEPATGRDG PGRRPRSGTA 500
RRAPVELPDR PMLATAATQR ELRGLDAAEW AFEMKWDGFR TLATVTMPDD 550
GTRGGEPSVR LTSRTGLDMT KTYPELQALA GMLSPDDLPA VLDGEIVALD 600
ARGRPEFRRL QQRANLQKKG DVEAARRRVK VDLMLFDVLA LAGETLTDRT 650
YDERRRLLER TVRPARPVHV PPAFDGDLEA ATDTSRELRL EGILAKRRSS 700
RYAPGRRSRE WLKLKHSRMQ EVVVVGWRPL HAGEAREDDR TMGSLLLALP 750
APQHGDGALR YVGKVGTGFR EKERTQIATR LRGIERATPP VDGVPRAEAR 800
HARWVTPRLV GEVEYGDWTA DPTDPDLVDE ARLRHATWRG WREDKAPADV 850
RPE 853
Length:853
Mass (Da):94,862
Last modified:July 27, 2011 - v1
Checksum:i9985F73338F31E92
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002810 Genomic DNA. Translation: AEG44747.1.
RefSeqiWP_013839138.1. NC_015588.1.
YP_004542641.1. NC_015588.1.

Genome annotation databases

EnsemblBacteriaiAEG44747; AEG44747; Isova_2011.
GeneIDi10733636.
KEGGiiva:Isova_2011.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002810 Genomic DNA. Translation: AEG44747.1 .
RefSeqi WP_013839138.1. NC_015588.1.
YP_004542641.1. NC_015588.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AEG44747 ; AEG44747 ; Isova_2011 .
GeneIDi 10733636.
KEGGi iva:Isova_2011.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci IVAR743718:GI39-2048-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 225.

Entry informationi

Entry nameiF6FPL5_ISOV2
AccessioniPrimary (citable) accession number: F6FPL5
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: September 3, 2014
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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