F6FPL5 (F6FPL5_ISOV2) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA polymerase LigD, polymerase domain protein EMBL AEG44747.1

Gene names

Ordered Locus Names:

Isova_2011

Organism

Isoptericola variabilis (strain 225) [Complete proteome] [HAMAP]

Taxonomic identifier

743718 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Micrococcineae › Promicromonosporaceae › Isoptericola › Isoptericola variabilis

Protein attributes

Sequence length	853 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro DNA primase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F6FPL5 [UniParc]. Last modified July 27, 2011. Version 1. Checksum: 9985F73338F31E92	FASTA	853	94,862
	10 20 30 40 50 60 MARSSASGGT TKQTVSVEGH RLQLTNLDKV LYPATGTTKG EVLHYLAEIA PVLIPHAANR 70 80 90 100 110 120 PATRKRWPDG VDGQVFFQKN ADKSTPSWVR TRRIEHKTSA NDYVLVNDLA TLTWLGQTAT 130 140 150 160 170 180 LEVHVPQWQF GRTGVRHNPD RLVLDLDPGP GAGLPECAQV ARWARAILVG MGLEPMPVTS 190 200 210 220 230 240 GSKGIHLYAA LDGKQDSEQV SAVAKELARY LESEHPDLVV SDMKKSLRGG KVLVDWSQNN 250 260 270 280 290 300 GNKTTIAPYS LRGRDHPTVA APRTWDELDD PDLRHLEYPE VLERVARDGD LLADLTQGHL 310 320 330 340 350 360 AALEPTPEHM ARFERLEVYR SKRDPDKTPE PFGPSSPAAD APPGDTRPTF VIQEHHARRL 370 380 390 400 410 420 HWDFRLEHDG VLVSWALPKG EPTDPAKNHL AVQTEDHPLE YGSFEGTIPA GEYGAGEVTI 430 440 450 460 470 480 WDAGTYDLEK WVDGKEVIVT LHSERRGSRR LALIQTGGRD GDENSWLIHR TKEQPGGAGP 490 500 510 520 530 540 AEEPATGRDG PGRRPRSGTA RRAPVELPDR PMLATAATQR ELRGLDAAEW AFEMKWDGFR 550 560 570 580 590 600 TLATVTMPDD GTRGGEPSVR LTSRTGLDMT KTYPELQALA GMLSPDDLPA VLDGEIVALD 610 620 630 640 650 660 ARGRPEFRRL QQRANLQKKG DVEAARRRVK VDLMLFDVLA LAGETLTDRT YDERRRLLER 670 680 690 700 710 720 TVRPARPVHV PPAFDGDLEA ATDTSRELRL EGILAKRRSS RYAPGRRSRE WLKLKHSRMQ 730 740 750 760 770 780 EVVVVGWRPL HAGEAREDDR TMGSLLLALP APQHGDGALR YVGKVGTGFR EKERTQIATR 790 800 810 820 830 840 LRGIERATPP VDGVPRAEAR HARWVTPRLV GEVEYGDWTA DPTDPDLVDE ARLRHATWRG 850 WREDKAPADV RPE

References

[1]

"Complete sequence of Isoptericola variabilis 225." US DOE Joint Genome Institute Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Mikhailova N., Zeytun A., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Siebers A., Allgaier M. , Thelen M., Hugenholtz P., Gladden J., Woyke T. Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 225.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002810 Genomic DNA. Translation: AEG44747.1.
RefSeq	YP_004542641.1. NC_015588.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEG44747; AEG44747; Isova_2011.
GeneID	10733636.
KEGG	iva:Isova_2011.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01971.
Enzyme and pathway databases
BioCyc	IVAR743718:GI39-2048-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR002755. DNA_primase_S. IPR014144. LigD_PE_domain. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF01896. DNA_primase_S. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02777. LigD_PE_dom. 1 hit. TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

F6FPL5_ISOV2

Accession

Primary (citable) accession number: F6FPL5

Entry history

Integrated into UniProtKB/TrEMBL:	July 27, 2011
Last sequence update:	July 27, 2011
Last modified:	April 3, 2013
This is version 10 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)