Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

F6FPL5

- F6FPL5_ISOV2

UniProt

F6FPL5 - F6FPL5_ISOV2

Protein
Submitted name:

DNA polymerase LigD, polymerase domain protein

Gene

Isova_2011

Organism
Isoptericola variabilis (strain 225)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 15 (01 Oct 2014)
      Sequence version 1 (27 Jul 2011)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Enzyme and pathway databases

    BioCyciIVAR743718:GI39-2048-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA polymerase LigD, polymerase domain proteinImported
    Gene namesi
    Ordered Locus Names:Isova_2011Imported
    OrganismiIsoptericola variabilis (strain 225)Imported
    Taxonomic identifieri743718 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesMicrococcineaePromicromonosporaceaeIsoptericola
    ProteomesiUP000009236: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F6FPL5-1 [UniParc]FASTAAdd to Basket

    « Hide

    MARSSASGGT TKQTVSVEGH RLQLTNLDKV LYPATGTTKG EVLHYLAEIA    50
    PVLIPHAANR PATRKRWPDG VDGQVFFQKN ADKSTPSWVR TRRIEHKTSA 100
    NDYVLVNDLA TLTWLGQTAT LEVHVPQWQF GRTGVRHNPD RLVLDLDPGP 150
    GAGLPECAQV ARWARAILVG MGLEPMPVTS GSKGIHLYAA LDGKQDSEQV 200
    SAVAKELARY LESEHPDLVV SDMKKSLRGG KVLVDWSQNN GNKTTIAPYS 250
    LRGRDHPTVA APRTWDELDD PDLRHLEYPE VLERVARDGD LLADLTQGHL 300
    AALEPTPEHM ARFERLEVYR SKRDPDKTPE PFGPSSPAAD APPGDTRPTF 350
    VIQEHHARRL HWDFRLEHDG VLVSWALPKG EPTDPAKNHL AVQTEDHPLE 400
    YGSFEGTIPA GEYGAGEVTI WDAGTYDLEK WVDGKEVIVT LHSERRGSRR 450
    LALIQTGGRD GDENSWLIHR TKEQPGGAGP AEEPATGRDG PGRRPRSGTA 500
    RRAPVELPDR PMLATAATQR ELRGLDAAEW AFEMKWDGFR TLATVTMPDD 550
    GTRGGEPSVR LTSRTGLDMT KTYPELQALA GMLSPDDLPA VLDGEIVALD 600
    ARGRPEFRRL QQRANLQKKG DVEAARRRVK VDLMLFDVLA LAGETLTDRT 650
    YDERRRLLER TVRPARPVHV PPAFDGDLEA ATDTSRELRL EGILAKRRSS 700
    RYAPGRRSRE WLKLKHSRMQ EVVVVGWRPL HAGEAREDDR TMGSLLLALP 750
    APQHGDGALR YVGKVGTGFR EKERTQIATR LRGIERATPP VDGVPRAEAR 800
    HARWVTPRLV GEVEYGDWTA DPTDPDLVDE ARLRHATWRG WREDKAPADV 850
    RPE 853
    Length:853
    Mass (Da):94,862
    Last modified:July 27, 2011 - v1
    Checksum:i9985F73338F31E92
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002810 Genomic DNA. Translation: AEG44747.1.
    RefSeqiWP_013839138.1. NC_015588.1.
    YP_004542641.1. NC_015588.1.

    Genome annotation databases

    EnsemblBacteriaiAEG44747; AEG44747; Isova_2011.
    GeneIDi10733636.
    KEGGiiva:Isova_2011.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002810 Genomic DNA. Translation: AEG44747.1 .
    RefSeqi WP_013839138.1. NC_015588.1.
    YP_004542641.1. NC_015588.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEG44747 ; AEG44747 ; Isova_2011 .
    GeneIDi 10733636.
    KEGGi iva:Isova_2011.

    Phylogenomic databases

    KOi K01971.

    Enzyme and pathway databases

    BioCyci IVAR743718:GI39-2048-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 225Imported.

    Entry informationi

    Entry nameiF6FPL5_ISOV2
    AccessioniPrimary (citable) accession number: F6FPL5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 27, 2011
    Last sequence update: July 27, 2011
    Last modified: October 1, 2014
    This is version 15 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3