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F6F2G7

- F6F2G7_SPHCR

UniProt

F6F2G7 - F6F2G7_SPHCR

Protein
Submitted name:

DNA ligase D

Gene

Sphch_2999

Organism
Sphingobium chlorophenolicum L-1
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 18 (01 Oct 2014)
      Sequence version 1 (27 Jul 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciSCHL690566:GJJA-3053-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase DImported
    Gene namesi
    ORF Names:Sphch_2999Imported
    OrganismiSphingobium chlorophenolicum L-1Imported
    Taxonomic identifieri690566 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaSphingomonadalesSphingomonadaceaeSphingobium
    ProteomesiUP000007150: Chromosome 2

    Structurei

    3D structure databases

    ProteinModelPortaliF6F2G7.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F6F2G7-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAADPLAPYN AKRDFRRTRE PAGKVAKKGG NSFVVQKHAA TRLHWDFRLE    50
    IDGVLKSWAV TKGPSLDPAD KRLAVRTEDH PIDYGSFEGN IPKGEYGGGT 100
    VMLWDRGSWE PVPGKSADDL KDGHLHFILH GERMKGEWLL VRMKGRPGEK 150
    RENWLLRKID DGEAGKGDML VERALTSVLT DRSMAQIEAD AEATQSLKGS 200
    GKRAFSDKMR AAEVHNAKVR SKAGRKTGGG ALPRFVKPQL ATLVDSVPAG 250
    NDWLHEIKYD GYRMLIAVDG AKVKLFTRNG LDWTDKFGPL AESIAALDLP 300
    SALIDGEVVA LGEDGNPSFS ALQAVLKRGH GAQRADTPFH LFAFDLLFLD 350
    GMDLRPLPTI ERKERLEALL HDSQPPVHVA DHLIGAGEKL YRSLCDAGQE 400
    GIIAKRIDAP YRGDRTRNWV KVKCVRRQEF VLVGWTKSKA KGRPFSSLLL 450
    AQNEGGAMVY KGKVGTGFDA AAMEELAGAM APLAVDKAPL EVPRAEARGV 500
    QWIKPRLVAE VAFAEFTGDG RVRHGTFLGL RSDKPAKAVQ PERAEPAPLP 550
    QNGVTISNRE RIIFPEDGLT KGDLADYYAR VAPLMLPFAA NRPISLVRCP 600
    QGRAKKCFFQ KHDSGSFGDH VRQVPIREKD EGWEDYIYVE DADGLMACVQ 650
    MGTIEFHGWE SRADAVEKPD RMIFDLDPDE GMDFAKVRQA ARDIRDRLSD 700
    IGLVSFAMLS GGKGVHVVAP LTPGHDWDAH KDFASRFAQA LSAAEPDRFV 750
    ATMSKAKRKG RIFIDWLRNQ RGSTAVLPYS VRARPGAPVA VPIDWDELGG 800
    MKDAHPFGIR DAEKLLRRSR ELNGWGFAAQ GLPGL 835
    Length:835
    Mass (Da):92,014
    Last modified:July 27, 2011 - v1
    Checksum:i3C04CB9C8FD3F46D
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002799 Genomic DNA. Translation: AEG50629.1.
    RefSeqiWP_013848861.1. NC_015594.1.
    YP_004555135.1. NC_015594.1.

    Genome annotation databases

    EnsemblBacteriaiAEG50629; AEG50629; Sphch_2999.
    GeneIDi10723342.
    KEGGisch:Sphch_2999.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002799 Genomic DNA. Translation: AEG50629.1 .
    RefSeqi WP_013848861.1. NC_015594.1.
    YP_004555135.1. NC_015594.1.

    3D structure databases

    ProteinModelPortali F6F2G7.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEG50629 ; AEG50629 ; Sphch_2999 .
    GeneIDi 10723342.
    KEGGi sch:Sphch_2999.

    Phylogenomic databases

    KOi K01971.

    Enzyme and pathway databases

    BioCyci SCHL690566:GJJA-3053-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of chromosome 2 of Sphingobium chlorophenolicum L-1."
      US DOE Joint Genome Institute
      Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Daligault H., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Turner P., Copley S., Woyke T.
      Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: L-1Imported.

    Entry informationi

    Entry nameiF6F2G7_SPHCR
    AccessioniPrimary (citable) accession number: F6F2G7
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 27, 2011
    Last sequence update: July 27, 2011
    Last modified: October 1, 2014
    This is version 18 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3