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Protein
Submitted name:

DNA ligase D

Gene

Sphch_2999

Organism
Sphingobium chlorophenolicum L-1
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionLigaseImported

Enzyme and pathway databases

BioCyciSCHL690566:G1GN4-3024-MONOMER

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
ORF Names:Sphch_2999Imported
OrganismiSphingobium chlorophenolicum L-1Imported
Taxonomic identifieri690566 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaSphingomonadalesSphingomonadaceaeSphingobium
Proteomesi
  • UP000007150 Componenti: Chromosome 2

Interactioni

Protein-protein interaction databases

STRINGi690566.Sphch_2999

Structurei

3D structure databases

ProteinModelPortaliF6F2G7
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini332 – 423DNA_LIGASE_A3InterPro annotationAdd BLAST92

Phylogenomic databases

eggNOGiENOG4105DQE Bacteria
COG3285 LUCA
KOiK01971
OrthoDBiPOG091H0AZ9

Family and domain databases

CDDicd04862 PaeLigD_Pol_like, 1 hit
InterProiView protein in InterPro
IPR012309 DNA_ligase_ATP-dep_C
IPR012310 DNA_ligase_ATP-dep_cent
IPR014146 LigD_ligase_dom
IPR014144 LigD_PE_domain
IPR014145 LigD_pol_dom
IPR012340 NA-bd_OB-fold
IPR014143 NHEJ_ligase_prk
IPR033651 PaeLigD_Pol-like
PfamiView protein in Pfam
PF04679 DNA_ligase_A_C, 1 hit
PF01068 DNA_ligase_A_M, 1 hit
PF13298 LigD_N, 1 hit
SUPFAMiSSF50249 SSF50249, 1 hit
TIGRFAMsiTIGR02777 LigD_PE_dom, 1 hit
TIGR02778 ligD_pol, 1 hit
TIGR02779 NHEJ_ligase_lig, 1 hit
TIGR02776 NHEJ_ligase_prk, 1 hit
PROSITEiView protein in PROSITE
PS50160 DNA_LIGASE_A3, 1 hit

Sequencei

Sequence statusi: Complete.

F6F2G7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAADPLAPYN AKRDFRRTRE PAGKVAKKGG NSFVVQKHAA TRLHWDFRLE
60 70 80 90 100
IDGVLKSWAV TKGPSLDPAD KRLAVRTEDH PIDYGSFEGN IPKGEYGGGT
110 120 130 140 150
VMLWDRGSWE PVPGKSADDL KDGHLHFILH GERMKGEWLL VRMKGRPGEK
160 170 180 190 200
RENWLLRKID DGEAGKGDML VERALTSVLT DRSMAQIEAD AEATQSLKGS
210 220 230 240 250
GKRAFSDKMR AAEVHNAKVR SKAGRKTGGG ALPRFVKPQL ATLVDSVPAG
260 270 280 290 300
NDWLHEIKYD GYRMLIAVDG AKVKLFTRNG LDWTDKFGPL AESIAALDLP
310 320 330 340 350
SALIDGEVVA LGEDGNPSFS ALQAVLKRGH GAQRADTPFH LFAFDLLFLD
360 370 380 390 400
GMDLRPLPTI ERKERLEALL HDSQPPVHVA DHLIGAGEKL YRSLCDAGQE
410 420 430 440 450
GIIAKRIDAP YRGDRTRNWV KVKCVRRQEF VLVGWTKSKA KGRPFSSLLL
460 470 480 490 500
AQNEGGAMVY KGKVGTGFDA AAMEELAGAM APLAVDKAPL EVPRAEARGV
510 520 530 540 550
QWIKPRLVAE VAFAEFTGDG RVRHGTFLGL RSDKPAKAVQ PERAEPAPLP
560 570 580 590 600
QNGVTISNRE RIIFPEDGLT KGDLADYYAR VAPLMLPFAA NRPISLVRCP
610 620 630 640 650
QGRAKKCFFQ KHDSGSFGDH VRQVPIREKD EGWEDYIYVE DADGLMACVQ
660 670 680 690 700
MGTIEFHGWE SRADAVEKPD RMIFDLDPDE GMDFAKVRQA ARDIRDRLSD
710 720 730 740 750
IGLVSFAMLS GGKGVHVVAP LTPGHDWDAH KDFASRFAQA LSAAEPDRFV
760 770 780 790 800
ATMSKAKRKG RIFIDWLRNQ RGSTAVLPYS VRARPGAPVA VPIDWDELGG
810 820 830
MKDAHPFGIR DAEKLLRRSR ELNGWGFAAQ GLPGL
Length:835
Mass (Da):92,014
Last modified:July 27, 2011 - v1
Checksum:i3C04CB9C8FD3F46D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002799 Genomic DNA Translation: AEG50629.1
RefSeqiWP_013848861.1, NC_015594.1

Genome annotation databases

EnsemblBacteriaiAEG50629; AEG50629; Sphch_2999
GeneIDi35854486
KEGGisch:Sphch_2999

Similar proteinsi

Entry informationi

Entry nameiF6F2G7_SPHCR
AccessioniPrimary (citable) accession number: F6F2G7
Entry historyiIntegrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: April 25, 2018
This is version 37 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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Main funding by: National Institutes of Health