F6F2G7 (F6F2G7_SPHCR) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA ligase D EMBL AEG50629.1

Gene names

ORF Names:

Sphch_2999 EMBL AEG50629.1

Organism

Sphingobium chlorophenolicum L-1 EMBL AEG50629.1

Taxonomic identifier

690566 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Sphingomonadales › Sphingomonadaceae › Sphingobium › Sphingobium chlorophenolicum

Protein attributes

Sequence length	835 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL AEG50629.1
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro DNA primase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F6F2G7 [UniParc]. Last modified July 27, 2011. Version 1. Checksum: 3C04CB9C8FD3F46D	FASTA	835	92,014
	10 20 30 40 50 60 MAADPLAPYN AKRDFRRTRE PAGKVAKKGG NSFVVQKHAA TRLHWDFRLE IDGVLKSWAV 70 80 90 100 110 120 TKGPSLDPAD KRLAVRTEDH PIDYGSFEGN IPKGEYGGGT VMLWDRGSWE PVPGKSADDL 130 140 150 160 170 180 KDGHLHFILH GERMKGEWLL VRMKGRPGEK RENWLLRKID DGEAGKGDML VERALTSVLT 190 200 210 220 230 240 DRSMAQIEAD AEATQSLKGS GKRAFSDKMR AAEVHNAKVR SKAGRKTGGG ALPRFVKPQL 250 260 270 280 290 300 ATLVDSVPAG NDWLHEIKYD GYRMLIAVDG AKVKLFTRNG LDWTDKFGPL AESIAALDLP 310 320 330 340 350 360 SALIDGEVVA LGEDGNPSFS ALQAVLKRGH GAQRADTPFH LFAFDLLFLD GMDLRPLPTI 370 380 390 400 410 420 ERKERLEALL HDSQPPVHVA DHLIGAGEKL YRSLCDAGQE GIIAKRIDAP YRGDRTRNWV 430 440 450 460 470 480 KVKCVRRQEF VLVGWTKSKA KGRPFSSLLL AQNEGGAMVY KGKVGTGFDA AAMEELAGAM 490 500 510 520 530 540 APLAVDKAPL EVPRAEARGV QWIKPRLVAE VAFAEFTGDG RVRHGTFLGL RSDKPAKAVQ 550 560 570 580 590 600 PERAEPAPLP QNGVTISNRE RIIFPEDGLT KGDLADYYAR VAPLMLPFAA NRPISLVRCP 610 620 630 640 650 660 QGRAKKCFFQ KHDSGSFGDH VRQVPIREKD EGWEDYIYVE DADGLMACVQ MGTIEFHGWE 670 680 690 700 710 720 SRADAVEKPD RMIFDLDPDE GMDFAKVRQA ARDIRDRLSD IGLVSFAMLS GGKGVHVVAP 730 740 750 760 770 780 LTPGHDWDAH KDFASRFAQA LSAAEPDRFV ATMSKAKRKG RIFIDWLRNQ RGSTAVLPYS 790 800 810 820 830 VRARPGAPVA VPIDWDELGG MKDAHPFGIR DAEKLLRRSR ELNGWGFAAQ GLPGL

References

[1]

"Complete sequence of chromosome 2 of Sphingobium chlorophenolicum L-1." US DOE Joint Genome Institute Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Daligault H., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Turner P., Copley S., Woyke T. Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: L-1 EMBL AEG50629.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002799 Genomic DNA. Translation: AEG50629.1.
RefSeq	YP_004555135.1. NC_015594.1.
3D structure databases
ProteinModelPortal	F6F2G7.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEG50629; AEG50629; Sphch_2999.
GeneID	10723342.
KEGG	sch:Sphch_2999.
Phylogenomic databases
KO	K01971.
Enzyme and pathway databases
BioCyc	SCHL690566:GJJA-3053-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR002755. DNA_primase_S. IPR014144. LigD_PE_domain. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. IPR014143. NHEJ_ligase_prk. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF01896. DNA_primase_S. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02777. LigD_PE_dom. 1 hit. TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit. TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

F6F2G7_SPHCR

Accession

Primary (citable) accession number: F6F2G7

Entry history

Integrated into UniProtKB/TrEMBL:	July 27, 2011
Last sequence update:	July 27, 2011
Last modified:	April 3, 2013
This is version 12 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)