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F6F2G7

- F6F2G7_SPHCR

UniProt

F6F2G7 - F6F2G7_SPHCR

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Protein
Submitted name:

DNA ligase D

Gene
Sphch_2999
Organism
Sphingobium chlorophenolicum L-1
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSCHL690566:GJJA-3053-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
ORF Names:Sphch_2999Imported
OrganismiSphingobium chlorophenolicum L-1Imported
Taxonomic identifieri690566 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaSphingomonadalesSphingomonadaceaeSphingobium
ProteomesiUP000007150: Chromosome 2

Structurei

3D structure databases

ProteinModelPortaliF6F2G7.

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F6F2G7-1 [UniParc]FASTAAdd to Basket

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MAADPLAPYN AKRDFRRTRE PAGKVAKKGG NSFVVQKHAA TRLHWDFRLE    50
IDGVLKSWAV TKGPSLDPAD KRLAVRTEDH PIDYGSFEGN IPKGEYGGGT 100
VMLWDRGSWE PVPGKSADDL KDGHLHFILH GERMKGEWLL VRMKGRPGEK 150
RENWLLRKID DGEAGKGDML VERALTSVLT DRSMAQIEAD AEATQSLKGS 200
GKRAFSDKMR AAEVHNAKVR SKAGRKTGGG ALPRFVKPQL ATLVDSVPAG 250
NDWLHEIKYD GYRMLIAVDG AKVKLFTRNG LDWTDKFGPL AESIAALDLP 300
SALIDGEVVA LGEDGNPSFS ALQAVLKRGH GAQRADTPFH LFAFDLLFLD 350
GMDLRPLPTI ERKERLEALL HDSQPPVHVA DHLIGAGEKL YRSLCDAGQE 400
GIIAKRIDAP YRGDRTRNWV KVKCVRRQEF VLVGWTKSKA KGRPFSSLLL 450
AQNEGGAMVY KGKVGTGFDA AAMEELAGAM APLAVDKAPL EVPRAEARGV 500
QWIKPRLVAE VAFAEFTGDG RVRHGTFLGL RSDKPAKAVQ PERAEPAPLP 550
QNGVTISNRE RIIFPEDGLT KGDLADYYAR VAPLMLPFAA NRPISLVRCP 600
QGRAKKCFFQ KHDSGSFGDH VRQVPIREKD EGWEDYIYVE DADGLMACVQ 650
MGTIEFHGWE SRADAVEKPD RMIFDLDPDE GMDFAKVRQA ARDIRDRLSD 700
IGLVSFAMLS GGKGVHVVAP LTPGHDWDAH KDFASRFAQA LSAAEPDRFV 750
ATMSKAKRKG RIFIDWLRNQ RGSTAVLPYS VRARPGAPVA VPIDWDELGG 800
MKDAHPFGIR DAEKLLRRSR ELNGWGFAAQ GLPGL 835
Length:835
Mass (Da):92,014
Last modified:July 27, 2011 - v1
Checksum:i3C04CB9C8FD3F46D
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002799 Genomic DNA. Translation: AEG50629.1.
RefSeqiWP_013848861.1. NC_015594.1.
YP_004555135.1. NC_015594.1.

Genome annotation databases

EnsemblBacteriaiAEG50629; AEG50629; Sphch_2999.
GeneIDi10723342.
KEGGisch:Sphch_2999.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002799 Genomic DNA. Translation: AEG50629.1 .
RefSeqi WP_013848861.1. NC_015594.1.
YP_004555135.1. NC_015594.1.

3D structure databases

ProteinModelPortali F6F2G7.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AEG50629 ; AEG50629 ; Sphch_2999 .
GeneIDi 10723342.
KEGGi sch:Sphch_2999.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci SCHL690566:GJJA-3053-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of chromosome 2 of Sphingobium chlorophenolicum L-1."
    US DOE Joint Genome Institute
    Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Daligault H., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Turner P., Copley S., Woyke T.
    Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: L-1Imported.

Entry informationi

Entry nameiF6F2G7_SPHCR
AccessioniPrimary (citable) accession number: F6F2G7
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: September 3, 2014
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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