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Protein
Submitted name:

DNA ligase D

Gene

Sphch_2999

Organism
Sphingobium chlorophenolicum L-1
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSCHL690566:GJJA-3053-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
ORF Names:Sphch_2999Imported
OrganismiSphingobium chlorophenolicum L-1Imported
Taxonomic identifieri690566 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaSphingomonadalesSphingomonadaceaeSphingobium
ProteomesiUP000007150: Chromosome 2

Structurei

3D structure databases

ProteinModelPortaliF6F2G7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F6F2G7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAADPLAPYN AKRDFRRTRE PAGKVAKKGG NSFVVQKHAA TRLHWDFRLE
60 70 80 90 100
IDGVLKSWAV TKGPSLDPAD KRLAVRTEDH PIDYGSFEGN IPKGEYGGGT
110 120 130 140 150
VMLWDRGSWE PVPGKSADDL KDGHLHFILH GERMKGEWLL VRMKGRPGEK
160 170 180 190 200
RENWLLRKID DGEAGKGDML VERALTSVLT DRSMAQIEAD AEATQSLKGS
210 220 230 240 250
GKRAFSDKMR AAEVHNAKVR SKAGRKTGGG ALPRFVKPQL ATLVDSVPAG
260 270 280 290 300
NDWLHEIKYD GYRMLIAVDG AKVKLFTRNG LDWTDKFGPL AESIAALDLP
310 320 330 340 350
SALIDGEVVA LGEDGNPSFS ALQAVLKRGH GAQRADTPFH LFAFDLLFLD
360 370 380 390 400
GMDLRPLPTI ERKERLEALL HDSQPPVHVA DHLIGAGEKL YRSLCDAGQE
410 420 430 440 450
GIIAKRIDAP YRGDRTRNWV KVKCVRRQEF VLVGWTKSKA KGRPFSSLLL
460 470 480 490 500
AQNEGGAMVY KGKVGTGFDA AAMEELAGAM APLAVDKAPL EVPRAEARGV
510 520 530 540 550
QWIKPRLVAE VAFAEFTGDG RVRHGTFLGL RSDKPAKAVQ PERAEPAPLP
560 570 580 590 600
QNGVTISNRE RIIFPEDGLT KGDLADYYAR VAPLMLPFAA NRPISLVRCP
610 620 630 640 650
QGRAKKCFFQ KHDSGSFGDH VRQVPIREKD EGWEDYIYVE DADGLMACVQ
660 670 680 690 700
MGTIEFHGWE SRADAVEKPD RMIFDLDPDE GMDFAKVRQA ARDIRDRLSD
710 720 730 740 750
IGLVSFAMLS GGKGVHVVAP LTPGHDWDAH KDFASRFAQA LSAAEPDRFV
760 770 780 790 800
ATMSKAKRKG RIFIDWLRNQ RGSTAVLPYS VRARPGAPVA VPIDWDELGG
810 820 830
MKDAHPFGIR DAEKLLRRSR ELNGWGFAAQ GLPGL
Length:835
Mass (Da):92,014
Last modified:July 27, 2011 - v1
Checksum:i3C04CB9C8FD3F46D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002799 Genomic DNA. Translation: AEG50629.1.
RefSeqiYP_004555135.1. NC_015594.1.

Genome annotation databases

EnsemblBacteriaiAEG50629; AEG50629; Sphch_2999.
GeneIDi10723342.
KEGGisch:Sphch_2999.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002799 Genomic DNA. Translation: AEG50629.1.
RefSeqiYP_004555135.1. NC_015594.1.

3D structure databases

ProteinModelPortaliF6F2G7.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEG50629; AEG50629; Sphch_2999.
GeneIDi10723342.
KEGGisch:Sphch_2999.

Phylogenomic databases

KOiK01971.

Enzyme and pathway databases

BioCyciSCHL690566:GJJA-3053-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of chromosome 2 of Sphingobium chlorophenolicum L-1."
    US DOE Joint Genome Institute
    Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Daligault H., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Turner P., Copley S., Woyke T.
    Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: L-1Imported.

Entry informationi

Entry nameiF6F2G7_SPHCR
AccessioniPrimary (citable) accession number: F6F2G7
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: February 4, 2015
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.