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F6F2G7 (F6F2G7_SPHCR) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 16. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
ORF Names:Sphch_2999 EMBL AEG50629.1
OrganismSphingobium chlorophenolicum L-1 [Complete proteome] EMBL AEG50629.1
Taxonomic identifier690566 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaSphingomonadalesSphingomonadaceaeSphingobium

Protein attributes

Sequence length835 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Sequences

Sequence LengthMass (Da)Tools
F6F2G7 [UniParc].

Last modified July 27, 2011. Version 1.
Checksum: 3C04CB9C8FD3F46D

FASTA83592,014
        10         20         30         40         50         60 
MAADPLAPYN AKRDFRRTRE PAGKVAKKGG NSFVVQKHAA TRLHWDFRLE IDGVLKSWAV 

        70         80         90        100        110        120 
TKGPSLDPAD KRLAVRTEDH PIDYGSFEGN IPKGEYGGGT VMLWDRGSWE PVPGKSADDL 

       130        140        150        160        170        180 
KDGHLHFILH GERMKGEWLL VRMKGRPGEK RENWLLRKID DGEAGKGDML VERALTSVLT 

       190        200        210        220        230        240 
DRSMAQIEAD AEATQSLKGS GKRAFSDKMR AAEVHNAKVR SKAGRKTGGG ALPRFVKPQL 

       250        260        270        280        290        300 
ATLVDSVPAG NDWLHEIKYD GYRMLIAVDG AKVKLFTRNG LDWTDKFGPL AESIAALDLP 

       310        320        330        340        350        360 
SALIDGEVVA LGEDGNPSFS ALQAVLKRGH GAQRADTPFH LFAFDLLFLD GMDLRPLPTI 

       370        380        390        400        410        420 
ERKERLEALL HDSQPPVHVA DHLIGAGEKL YRSLCDAGQE GIIAKRIDAP YRGDRTRNWV 

       430        440        450        460        470        480 
KVKCVRRQEF VLVGWTKSKA KGRPFSSLLL AQNEGGAMVY KGKVGTGFDA AAMEELAGAM 

       490        500        510        520        530        540 
APLAVDKAPL EVPRAEARGV QWIKPRLVAE VAFAEFTGDG RVRHGTFLGL RSDKPAKAVQ 

       550        560        570        580        590        600 
PERAEPAPLP QNGVTISNRE RIIFPEDGLT KGDLADYYAR VAPLMLPFAA NRPISLVRCP 

       610        620        630        640        650        660 
QGRAKKCFFQ KHDSGSFGDH VRQVPIREKD EGWEDYIYVE DADGLMACVQ MGTIEFHGWE 

       670        680        690        700        710        720 
SRADAVEKPD RMIFDLDPDE GMDFAKVRQA ARDIRDRLSD IGLVSFAMLS GGKGVHVVAP 

       730        740        750        760        770        780 
LTPGHDWDAH KDFASRFAQA LSAAEPDRFV ATMSKAKRKG RIFIDWLRNQ RGSTAVLPYS 

       790        800        810        820        830 
VRARPGAPVA VPIDWDELGG MKDAHPFGIR DAEKLLRRSR ELNGWGFAAQ GLPGL 

« Hide

References

[1]"Complete sequence of chromosome 2 of Sphingobium chlorophenolicum L-1."
US DOE Joint Genome Institute
Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Daligault H., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Turner P., Copley S., Woyke T.
Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: L-1 EMBL AEG50629.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002799 Genomic DNA. Translation: AEG50629.1.
RefSeqYP_004555135.1. NC_015594.1.

3D structure databases

ProteinModelPortalF6F2G7.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEG50629; AEG50629; Sphch_2999.
GeneID10723342.
KEGGsch:Sphch_2999.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycSCHL690566:GJJA-3053-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF6F2G7_SPHCR
AccessionPrimary (citable) accession number: F6F2G7
Entry history
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: April 16, 2014
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)