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F6EZW2

- F6EZW2_SPHCR

UniProt

F6EZW2 - F6EZW2_SPHCR

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Protein
Submitted name:

ATP dependent DNA ligase

Gene
Sphch_0779
Organism
Sphingobium chlorophenolicum L-1
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSCHL690566:GJJA-793-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
ORF Names:Sphch_0779Imported
OrganismiSphingobium chlorophenolicum L-1Imported
Taxonomic identifieri690566 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaSphingomonadalesSphingomonadaceaeSphingobium
ProteomesiUP000007150: Chromosome 1

Structurei

3D structure databases

ProteinModelPortaliF6EZW2.

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F6EZW2-1 [UniParc]FASTAAdd to Basket

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MRAFSQLLDG LVYTRSRNGK LDLIAAYMRS APDPDRGWAL AALTGNLDLK    50
AVKASTIAEM TRARVDPVLF EMSRDYVGDL AETVALLWPK AEDQPPEVDD 100
GSLTLSAIID RLHATSRAAA PATLARMMDH LDASGRFALL KLATGGLRVG 150
ISARLAKTGF AQAFNLDVDD VEECWHALAP PYAALFQWAE GKADRPDPAG 200
TPFFRPFMLA HPLEAESVDL TDYAAEWKWD GIRVQIVGTP NETRLYSRAG 250
DDITGSFPDI AQALRHHAVL DGELLVKGEF QGGEAASFNA LQQRLGRKAV 300
TAKMMDEYPA FVRLYDILLD ADEDLRPLAW EQRRARLEAI VPQLDPHRFD 350
LSALIEAPDF DTLADIRAGA RDAAIEGVML KRRDSPYVAG RRAALWYKWK 400
RDPLTADCVM MYAQRGHGKR SSFYSDYTFG CWTEEGELLP VGKAYSGFTD 450
EELKWLDRFV RTNTVNRFGP VREVEKSLVL EVAFDSIHDS KRHKSGLAMR 500
FPRISRIRRD KPAQEADTVA GLRRLIS 527
Length:527
Mass (Da):58,841
Last modified:July 27, 2011 - v1
Checksum:i105A81DA66BDDB45
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002798 Genomic DNA. Translation: AEG48473.1.
RefSeqiYP_004552979.1. NC_015593.1.

Genome annotation databases

EnsemblBacteriaiAEG48473; AEG48473; Sphch_0779.
GeneIDi10741100.
KEGGisch:Sphch_0779.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002798 Genomic DNA. Translation: AEG48473.1 .
RefSeqi YP_004552979.1. NC_015593.1.

3D structure databases

ProteinModelPortali F6EZW2.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AEG48473 ; AEG48473 ; Sphch_0779 .
GeneIDi 10741100.
KEGGi sch:Sphch_0779.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci SCHL690566:GJJA-793-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of chromosome 1 of Sphingobium chlorophenolicum L-1."
    US DOE Joint Genome Institute
    Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Daligault H., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Turner P., Copley S., Woyke T.
    Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: L-1Imported.

Entry informationi

Entry nameiF6EZW2_SPHCR
AccessioniPrimary (citable) accession number: F6EZW2
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: January 22, 2014
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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