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F6EZW2 (F6EZW2_SPHCR) Unreviewed, UniProtKB/TrEMBL

Last modified January 22, 2014. Version 14. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
ORF Names:Sphch_0779 EMBL AEG48473.1
OrganismSphingobium chlorophenolicum L-1 [Complete proteome] EMBL AEG48473.1
Taxonomic identifier690566 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaSphingomonadalesSphingomonadaceaeSphingobium

Protein attributes

Sequence length527 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
F6EZW2 [UniParc].

Last modified July 27, 2011. Version 1.
Checksum: 105A81DA66BDDB45

FASTA52758,841
        10         20         30         40         50         60 
MRAFSQLLDG LVYTRSRNGK LDLIAAYMRS APDPDRGWAL AALTGNLDLK AVKASTIAEM 

        70         80         90        100        110        120 
TRARVDPVLF EMSRDYVGDL AETVALLWPK AEDQPPEVDD GSLTLSAIID RLHATSRAAA 

       130        140        150        160        170        180 
PATLARMMDH LDASGRFALL KLATGGLRVG ISARLAKTGF AQAFNLDVDD VEECWHALAP 

       190        200        210        220        230        240 
PYAALFQWAE GKADRPDPAG TPFFRPFMLA HPLEAESVDL TDYAAEWKWD GIRVQIVGTP 

       250        260        270        280        290        300 
NETRLYSRAG DDITGSFPDI AQALRHHAVL DGELLVKGEF QGGEAASFNA LQQRLGRKAV 

       310        320        330        340        350        360 
TAKMMDEYPA FVRLYDILLD ADEDLRPLAW EQRRARLEAI VPQLDPHRFD LSALIEAPDF 

       370        380        390        400        410        420 
DTLADIRAGA RDAAIEGVML KRRDSPYVAG RRAALWYKWK RDPLTADCVM MYAQRGHGKR 

       430        440        450        460        470        480 
SSFYSDYTFG CWTEEGELLP VGKAYSGFTD EELKWLDRFV RTNTVNRFGP VREVEKSLVL 

       490        500        510        520 
EVAFDSIHDS KRHKSGLAMR FPRISRIRRD KPAQEADTVA GLRRLIS 

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References

[1]"Complete sequence of chromosome 1 of Sphingobium chlorophenolicum L-1."
US DOE Joint Genome Institute
Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Daligault H., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Turner P., Copley S., Woyke T.
Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: L-1 EMBL AEG48473.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002798 Genomic DNA. Translation: AEG48473.1.
RefSeqYP_004552979.1. NC_015593.1.

3D structure databases

ProteinModelPortalF6EZW2.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEG48473; AEG48473; Sphch_0779.
GeneID10741100.
KEGGsch:Sphch_0779.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycSCHL690566:GJJA-793-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR04120. DNA_lig_bact. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF6EZW2_SPHCR
AccessionPrimary (citable) accession number: F6EZW2
Entry history
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: January 22, 2014
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)