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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Sphch_0779

Organism
Sphingobium chlorophenolicum L-1
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSCHL690566:GJJA-793-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
ORF Names:Sphch_0779Imported
OrganismiSphingobium chlorophenolicum L-1Imported
Taxonomic identifieri690566 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaSphingomonadalesSphingomonadaceaeSphingobium
ProteomesiUP000007150: Chromosome 1

Structurei

3D structure databases

ProteinModelPortaliF6EZW2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK10747.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F6EZW2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRAFSQLLDG LVYTRSRNGK LDLIAAYMRS APDPDRGWAL AALTGNLDLK
60 70 80 90 100
AVKASTIAEM TRARVDPVLF EMSRDYVGDL AETVALLWPK AEDQPPEVDD
110 120 130 140 150
GSLTLSAIID RLHATSRAAA PATLARMMDH LDASGRFALL KLATGGLRVG
160 170 180 190 200
ISARLAKTGF AQAFNLDVDD VEECWHALAP PYAALFQWAE GKADRPDPAG
210 220 230 240 250
TPFFRPFMLA HPLEAESVDL TDYAAEWKWD GIRVQIVGTP NETRLYSRAG
260 270 280 290 300
DDITGSFPDI AQALRHHAVL DGELLVKGEF QGGEAASFNA LQQRLGRKAV
310 320 330 340 350
TAKMMDEYPA FVRLYDILLD ADEDLRPLAW EQRRARLEAI VPQLDPHRFD
360 370 380 390 400
LSALIEAPDF DTLADIRAGA RDAAIEGVML KRRDSPYVAG RRAALWYKWK
410 420 430 440 450
RDPLTADCVM MYAQRGHGKR SSFYSDYTFG CWTEEGELLP VGKAYSGFTD
460 470 480 490 500
EELKWLDRFV RTNTVNRFGP VREVEKSLVL EVAFDSIHDS KRHKSGLAMR
510 520
FPRISRIRRD KPAQEADTVA GLRRLIS
Length:527
Mass (Da):58,841
Last modified:July 27, 2011 - v1
Checksum:i105A81DA66BDDB45
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002798 Genomic DNA. Translation: AEG48473.1.
RefSeqiWP_013846738.1. NC_015593.1.
YP_004552979.1. NC_015593.1.

Genome annotation databases

EnsemblBacteriaiAEG48473; AEG48473; Sphch_0779.
GeneIDi10741100.
KEGGisch:Sphch_0779.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002798 Genomic DNA. Translation: AEG48473.1.
RefSeqiWP_013846738.1. NC_015593.1.
YP_004552979.1. NC_015593.1.

3D structure databases

ProteinModelPortaliF6EZW2.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEG48473; AEG48473; Sphch_0779.
GeneIDi10741100.
KEGGisch:Sphch_0779.

Phylogenomic databases

KOiK10747.

Enzyme and pathway databases

BioCyciSCHL690566:GJJA-793-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of chromosome 1 of Sphingobium chlorophenolicum L-1."
    US DOE Joint Genome Institute
    Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Daligault H., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Turner P., Copley S., Woyke T.
    Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: L-1Imported.

Entry informationi

Entry nameiF6EZW2_SPHCR
AccessioniPrimary (citable) accession number: F6EZW2
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: March 4, 2015
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.