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F6EZW2

- F6EZW2_SPHCR

UniProt

F6EZW2 - F6EZW2_SPHCR

Protein
Submitted name:

ATP dependent DNA ligase

Gene

Sphch_0779

Organism
Sphingobium chlorophenolicum L-1
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 15 (01 Oct 2014)
      Sequence version 1 (27 Jul 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciSCHL690566:GJJA-793-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP dependent DNA ligaseImported
    Gene namesi
    ORF Names:Sphch_0779Imported
    OrganismiSphingobium chlorophenolicum L-1Imported
    Taxonomic identifieri690566 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaSphingomonadalesSphingomonadaceaeSphingobium
    ProteomesiUP000007150: Chromosome 1

    Structurei

    3D structure databases

    ProteinModelPortaliF6EZW2.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F6EZW2-1 [UniParc]FASTAAdd to Basket

    « Hide

    MRAFSQLLDG LVYTRSRNGK LDLIAAYMRS APDPDRGWAL AALTGNLDLK    50
    AVKASTIAEM TRARVDPVLF EMSRDYVGDL AETVALLWPK AEDQPPEVDD 100
    GSLTLSAIID RLHATSRAAA PATLARMMDH LDASGRFALL KLATGGLRVG 150
    ISARLAKTGF AQAFNLDVDD VEECWHALAP PYAALFQWAE GKADRPDPAG 200
    TPFFRPFMLA HPLEAESVDL TDYAAEWKWD GIRVQIVGTP NETRLYSRAG 250
    DDITGSFPDI AQALRHHAVL DGELLVKGEF QGGEAASFNA LQQRLGRKAV 300
    TAKMMDEYPA FVRLYDILLD ADEDLRPLAW EQRRARLEAI VPQLDPHRFD 350
    LSALIEAPDF DTLADIRAGA RDAAIEGVML KRRDSPYVAG RRAALWYKWK 400
    RDPLTADCVM MYAQRGHGKR SSFYSDYTFG CWTEEGELLP VGKAYSGFTD 450
    EELKWLDRFV RTNTVNRFGP VREVEKSLVL EVAFDSIHDS KRHKSGLAMR 500
    FPRISRIRRD KPAQEADTVA GLRRLIS 527
    Length:527
    Mass (Da):58,841
    Last modified:July 27, 2011 - v1
    Checksum:i105A81DA66BDDB45
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002798 Genomic DNA. Translation: AEG48473.1.
    RefSeqiYP_004552979.1. NC_015593.1.

    Genome annotation databases

    EnsemblBacteriaiAEG48473; AEG48473; Sphch_0779.
    GeneIDi10741100.
    KEGGisch:Sphch_0779.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002798 Genomic DNA. Translation: AEG48473.1 .
    RefSeqi YP_004552979.1. NC_015593.1.

    3D structure databases

    ProteinModelPortali F6EZW2.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEG48473 ; AEG48473 ; Sphch_0779 .
    GeneIDi 10741100.
    KEGGi sch:Sphch_0779.

    Phylogenomic databases

    KOi K01971.

    Enzyme and pathway databases

    BioCyci SCHL690566:GJJA-793-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of chromosome 1 of Sphingobium chlorophenolicum L-1."
      US DOE Joint Genome Institute
      Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Daligault H., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Turner P., Copley S., Woyke T.
      Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: L-1Imported.

    Entry informationi

    Entry nameiF6EZW2_SPHCR
    AccessioniPrimary (citable) accession number: F6EZW2
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 27, 2011
    Last sequence update: July 27, 2011
    Last modified: October 1, 2014
    This is version 15 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3