F6EZW2 (F6EZW2_SPHCR) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP dependent DNA ligase EMBL AEG48473.1

Gene names

ORF Names:

Sphch_0779 EMBL AEG48473.1

Organism

Sphingobium chlorophenolicum L-1 EMBL AEG48473.1

Taxonomic identifier

690566 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Sphingomonadales › Sphingomonadaceae › Sphingobium › Sphingobium chlorophenolicum

Protein attributes

Sequence length	527 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL AEG48473.1
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F6EZW2 [UniParc]. Last modified July 27, 2011. Version 1. Checksum: 105A81DA66BDDB45	FASTA	527	58,841
	10 20 30 40 50 60 MRAFSQLLDG LVYTRSRNGK LDLIAAYMRS APDPDRGWAL AALTGNLDLK AVKASTIAEM 70 80 90 100 110 120 TRARVDPVLF EMSRDYVGDL AETVALLWPK AEDQPPEVDD GSLTLSAIID RLHATSRAAA 130 140 150 160 170 180 PATLARMMDH LDASGRFALL KLATGGLRVG ISARLAKTGF AQAFNLDVDD VEECWHALAP 190 200 210 220 230 240 PYAALFQWAE GKADRPDPAG TPFFRPFMLA HPLEAESVDL TDYAAEWKWD GIRVQIVGTP 250 260 270 280 290 300 NETRLYSRAG DDITGSFPDI AQALRHHAVL DGELLVKGEF QGGEAASFNA LQQRLGRKAV 310 320 330 340 350 360 TAKMMDEYPA FVRLYDILLD ADEDLRPLAW EQRRARLEAI VPQLDPHRFD LSALIEAPDF 370 380 390 400 410 420 DTLADIRAGA RDAAIEGVML KRRDSPYVAG RRAALWYKWK RDPLTADCVM MYAQRGHGKR 430 440 450 460 470 480 SSFYSDYTFG CWTEEGELLP VGKAYSGFTD EELKWLDRFV RTNTVNRFGP VREVEKSLVL 490 500 510 520 EVAFDSIHDS KRHKSGLAMR FPRISRIRRD KPAQEADTVA GLRRLIS

References

[1]

"Complete sequence of chromosome 1 of Sphingobium chlorophenolicum L-1." US DOE Joint Genome Institute Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Daligault H., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Turner P., Copley S., Woyke T. Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: L-1 EMBL AEG48473.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002798 Genomic DNA. Translation: AEG48473.1.
RefSeq	YP_004552979.1. NC_015593.1.
3D structure databases
ProteinModelPortal	F6EZW2.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEG48473; AEG48473; Sphch_0779.
GeneID	10741100.
KEGG	sch:Sphch_0779.
Phylogenomic databases
KO	K01971.
Enzyme and pathway databases
BioCyc	SCHL690566:GJJA-793-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

F6EZW2_SPHCR

Accession

Primary (citable) accession number: F6EZW2

Entry history

Integrated into UniProtKB/TrEMBL:	July 27, 2011
Last sequence update:	July 27, 2011
Last modified:	April 3, 2013
This is version 12 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)