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Protein
Submitted name:

DNA polymerase LigD, polymerase domain protein

Gene

AS9A_4216

Organism
Amycolicicoccus subflavus (strain DSM 45089 / DQS3-9A1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. DNA primase activity Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciASUB443218:GH9R-4255-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, polymerase domain proteinImported
Gene namesi
Ordered Locus Names:AS9A_4216Imported
OrganismiAmycolicicoccus subflavus (strain DSM 45089 / DQS3-9A1)Imported
Taxonomic identifieri443218 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeAmycolicicoccus
ProteomesiUP000009235: Chromosome

Family & Domainsi

Phylogenomic databases

OMAiPDEWRID.

Family and domain databases

InterProiIPR002755. DNA_primase_S.
IPR014145. LigD_pol.
[Graphical view]
PfamiPF01896. DNA_primase_S. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.

Sequencei

Sequence statusi: Complete.

F6EKA8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MELEVGDRVI KLSSPDRVYF TQRGETKLDL AKYYMSVGDG IVRALRERPC
60 70 80 90 100
MLHRFPDGVD GQKVHQKRLP RGAPPWVETV RLHFPRYNRT ADELCVTELG
110 120 130 140 150
SVIWAVQMST VEFHPWNSRR ADTEKPDEWR IDLDPMPKCP FSKVRRAAEV
160 170 180 190 200
SHEILEELGA VGWPKTSGGH GLHIYVRIKP EHGFAEVRRA ALAFAREVER
210 220 230 240 250
RLPDDVTTAW WRRDRSPSDL FVDYNQNARD HTIAAAYSVR GNPRGTVSAP
260 270 280 290 300
LKWDEIPDAE PNDFTIASMP DRFAKFGDLH EGIDDAVFDL QPLLEWADRD

GLEQ
Length:304
Mass (Da):34,866
Last modified:July 27, 2011 - v1
Checksum:i616A4DFDCA6C5F01
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002786 Genomic DNA. Translation: AEF42649.1.
RefSeqiYP_004495449.1. NC_015564.1.

Genome annotation databases

EnsemblBacteriaiAEF42649; AEF42649; AS9A_4216.
GeneIDi10636381.
KEGGiasd:AS9A_4216.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002786 Genomic DNA. Translation: AEF42649.1.
RefSeqiYP_004495449.1. NC_015564.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEF42649; AEF42649; AS9A_4216.
GeneIDi10636381.
KEGGiasd:AS9A_4216.

Phylogenomic databases

OMAiPDEWRID.

Enzyme and pathway databases

BioCyciASUB443218:GH9R-4255-MONOMER.

Family and domain databases

InterProiIPR002755. DNA_primase_S.
IPR014145. LigD_pol.
[Graphical view]
PfamiPF01896. DNA_primase_S. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of Amycolicicoccus subflavus DQS3-9A1T, an actinomycete isolated from crude oil-polluted soil."
    Cai M., Chen W.M., Nie Y., Chi C.Q., Wang Y.N., Tang Y.Q., Li G.Y., Wu X.L.
    J. Bacteriol. 193:4538-4539(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 45089 / DQS3-9A1Imported.

Entry informationi

Entry nameiF6EKA8_AMYSD
AccessioniPrimary (citable) accession number: F6EKA8
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: March 4, 2015
This is version 12 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.