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F6EK72

- F6EK72_AMYSD

UniProt

F6EK72 - F6EK72_AMYSD

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Protein
Submitted name:

ATP-dependent DNA ligase LigD

Gene
ligD, AS9A_4180
Organism
Amycolicicoccus subflavus (strain DSM 45089 / DQS3-9A1)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciASUB443218:GH9R-4219-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigDImported
Gene namesi
Name:ligDImported
Ordered Locus Names:AS9A_4180Imported
OrganismiAmycolicicoccus subflavus (strain DSM 45089 / DQS3-9A1)Imported
Taxonomic identifieri443218 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeAmycolicicoccus
ProteomesiUP000009235: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.
OMAiSKGIHLY.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F6EK72-1 [UniParc]FASTAAdd to Basket

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MSKLVIDGYT VALTHLDKVL YPETGTTKGE IIAYYEAIAS VMLPHIRDRP    50
ATRKRWPDGV TATPFFEKNI PFSAPDWIPR LPLEHKSRTV TYPLLNSTAA 100
LVWIGQQAAL EVHVPQWIAR SGKPGPANRI VFDLDPGPGT TLADCAVVAK 150
RIREIFREIG LPVYPVTSGS KGLHLYVPLV DPVSSAQASR VAQSVAASLE 200
RALPELVTAT MSKAARPGKI FVDWSQNSAA KTTIAPYSLR GQSHPYVAAP 250
RSWEELDDPH IAHLTFSDVL RRVDEFGDLL SPERPRPSES GPDRLALYRA 300
KRDRALTPEP VPEPSENLKE NESEPLFVIQ EHHARRLHYD FRLERDGVLV 350
SWAVPKNIPD TPDVNHLAVQ TEEHPMAYGS FAGEIPRGQY GAGEVKIWDR 400
GTYTLEKWRD DEVIVELHGK RAQGRYALIK TGGKNWLMHK MKAPDANRRV 450
RGIPRGLSPM LAKSASIKRL DAGEWAFEGK WDGYRAIAEI SEGTVRLLSR 500
SGIDVTRDYP QLRQLSEDLG GHEVVLDGEL VGFGEEGVTS FARLREAPRE 550
ATYLVFDVLY LDGTSLTRKP WSDRRKVLEA VAGLLRCASV PPLLTGSAED 600
AIAESVQRGW EGVIAKRRDS IYLPGQRGTA WLKHKNWRTQ NVVVGGWKPG 650
EGGHGGGIGA LLVGVMRDGK LRYAGRVGTG WSEKQRAELL ERLTLLVQEK 700
SPFADWASEP ESSETQLRDV VWVRPEMEGT VRFQEWTSAR RLRHPVWMRS 750
Length:750
Mass (Da):83,700
Last modified:July 27, 2011 - v1
Checksum:iA22014DC6A57869F
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002786 Genomic DNA. Translation: AEF42613.1.
RefSeqiYP_004495413.1. NC_015564.1.

Genome annotation databases

EnsemblBacteriaiAEF42613; AEF42613; AS9A_4180.
GeneIDi10636345.
KEGGiasd:AS9A_4180.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002786 Genomic DNA. Translation: AEF42613.1 .
RefSeqi YP_004495413.1. NC_015564.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AEF42613 ; AEF42613 ; AS9A_4180 .
GeneIDi 10636345.
KEGGi asd:AS9A_4180.

Phylogenomic databases

KOi K01971.
OMAi SKGIHLY.

Enzyme and pathway databases

BioCyci ASUB443218:GH9R-4219-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of Amycolicicoccus subflavus DQS3-9A1T, an actinomycete isolated from crude oil-polluted soil."
    Cai M., Chen W.M., Nie Y., Chi C.Q., Wang Y.N., Tang Y.Q., Li G.Y., Wu X.L.
    J. Bacteriol. 193:4538-4539(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 45089 / DQS3-9A1.

Entry informationi

Entry nameiF6EK72_AMYSD
AccessioniPrimary (citable) accession number: F6EK72
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: April 16, 2014
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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