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F6EK72

- F6EK72_AMYSD

UniProt

F6EK72 - F6EK72_AMYSD

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Protein
Submitted name:

ATP-dependent DNA ligase LigD

Gene

ligD

Organism
Amycolicicoccus subflavus (strain DSM 45089 / DQS3-9A1)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciASUB443218:GH9R-4219-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigDImported
Gene namesi
Name:ligDImported
Ordered Locus Names:AS9A_4180Imported
OrganismiAmycolicicoccus subflavus (strain DSM 45089 / DQS3-9A1)Imported
Taxonomic identifieri443218 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeAmycolicicoccus
ProteomesiUP000009235: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.
OMAiSKGIHLY.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F6EK72-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MSKLVIDGYT VALTHLDKVL YPETGTTKGE IIAYYEAIAS VMLPHIRDRP
60 70 80 90 100
ATRKRWPDGV TATPFFEKNI PFSAPDWIPR LPLEHKSRTV TYPLLNSTAA
110 120 130 140 150
LVWIGQQAAL EVHVPQWIAR SGKPGPANRI VFDLDPGPGT TLADCAVVAK
160 170 180 190 200
RIREIFREIG LPVYPVTSGS KGLHLYVPLV DPVSSAQASR VAQSVAASLE
210 220 230 240 250
RALPELVTAT MSKAARPGKI FVDWSQNSAA KTTIAPYSLR GQSHPYVAAP
260 270 280 290 300
RSWEELDDPH IAHLTFSDVL RRVDEFGDLL SPERPRPSES GPDRLALYRA
310 320 330 340 350
KRDRALTPEP VPEPSENLKE NESEPLFVIQ EHHARRLHYD FRLERDGVLV
360 370 380 390 400
SWAVPKNIPD TPDVNHLAVQ TEEHPMAYGS FAGEIPRGQY GAGEVKIWDR
410 420 430 440 450
GTYTLEKWRD DEVIVELHGK RAQGRYALIK TGGKNWLMHK MKAPDANRRV
460 470 480 490 500
RGIPRGLSPM LAKSASIKRL DAGEWAFEGK WDGYRAIAEI SEGTVRLLSR
510 520 530 540 550
SGIDVTRDYP QLRQLSEDLG GHEVVLDGEL VGFGEEGVTS FARLREAPRE
560 570 580 590 600
ATYLVFDVLY LDGTSLTRKP WSDRRKVLEA VAGLLRCASV PPLLTGSAED
610 620 630 640 650
AIAESVQRGW EGVIAKRRDS IYLPGQRGTA WLKHKNWRTQ NVVVGGWKPG
660 670 680 690 700
EGGHGGGIGA LLVGVMRDGK LRYAGRVGTG WSEKQRAELL ERLTLLVQEK
710 720 730 740 750
SPFADWASEP ESSETQLRDV VWVRPEMEGT VRFQEWTSAR RLRHPVWMRS
Length:750
Mass (Da):83,700
Last modified:July 27, 2011 - v1
Checksum:iA22014DC6A57869F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002786 Genomic DNA. Translation: AEF42613.1.
RefSeqiYP_004495413.1. NC_015564.1.

Genome annotation databases

EnsemblBacteriaiAEF42613; AEF42613; AS9A_4180.
GeneIDi10636345.
KEGGiasd:AS9A_4180.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002786 Genomic DNA. Translation: AEF42613.1 .
RefSeqi YP_004495413.1. NC_015564.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AEF42613 ; AEF42613 ; AS9A_4180 .
GeneIDi 10636345.
KEGGi asd:AS9A_4180.

Phylogenomic databases

KOi K01971.
OMAi SKGIHLY.

Enzyme and pathway databases

BioCyci ASUB443218:GH9R-4219-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of Amycolicicoccus subflavus DQS3-9A1T, an actinomycete isolated from crude oil-polluted soil."
    Cai M., Chen W.M., Nie Y., Chi C.Q., Wang Y.N., Tang Y.Q., Li G.Y., Wu X.L.
    J. Bacteriol. 193:4538-4539(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 45089 / DQS3-9A1Imported.

Entry informationi

Entry nameiF6EK72_AMYSD
AccessioniPrimary (citable) accession number: F6EK72
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: October 1, 2014
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3