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F6EK72

- F6EK72_AMYSD

UniProt

F6EK72 - F6EK72_AMYSD

Protein
Submitted name:

ATP-dependent DNA ligase LigD

Gene

ligD

Organism
Amycolicicoccus subflavus (strain DSM 45089 / DQS3-9A1)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 14 (01 Oct 2014)
      Sequence version 1 (27 Jul 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciASUB443218:GH9R-4219-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligase LigDImported
    Gene namesi
    Name:ligDImported
    Ordered Locus Names:AS9A_4180Imported
    OrganismiAmycolicicoccus subflavus (strain DSM 45089 / DQS3-9A1)Imported
    Taxonomic identifieri443218 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeAmycolicicoccus
    ProteomesiUP000009235: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.
    OMAiSKGIHLY.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F6EK72-1 [UniParc]FASTAAdd to Basket

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    MSKLVIDGYT VALTHLDKVL YPETGTTKGE IIAYYEAIAS VMLPHIRDRP    50
    ATRKRWPDGV TATPFFEKNI PFSAPDWIPR LPLEHKSRTV TYPLLNSTAA 100
    LVWIGQQAAL EVHVPQWIAR SGKPGPANRI VFDLDPGPGT TLADCAVVAK 150
    RIREIFREIG LPVYPVTSGS KGLHLYVPLV DPVSSAQASR VAQSVAASLE 200
    RALPELVTAT MSKAARPGKI FVDWSQNSAA KTTIAPYSLR GQSHPYVAAP 250
    RSWEELDDPH IAHLTFSDVL RRVDEFGDLL SPERPRPSES GPDRLALYRA 300
    KRDRALTPEP VPEPSENLKE NESEPLFVIQ EHHARRLHYD FRLERDGVLV 350
    SWAVPKNIPD TPDVNHLAVQ TEEHPMAYGS FAGEIPRGQY GAGEVKIWDR 400
    GTYTLEKWRD DEVIVELHGK RAQGRYALIK TGGKNWLMHK MKAPDANRRV 450
    RGIPRGLSPM LAKSASIKRL DAGEWAFEGK WDGYRAIAEI SEGTVRLLSR 500
    SGIDVTRDYP QLRQLSEDLG GHEVVLDGEL VGFGEEGVTS FARLREAPRE 550
    ATYLVFDVLY LDGTSLTRKP WSDRRKVLEA VAGLLRCASV PPLLTGSAED 600
    AIAESVQRGW EGVIAKRRDS IYLPGQRGTA WLKHKNWRTQ NVVVGGWKPG 650
    EGGHGGGIGA LLVGVMRDGK LRYAGRVGTG WSEKQRAELL ERLTLLVQEK 700
    SPFADWASEP ESSETQLRDV VWVRPEMEGT VRFQEWTSAR RLRHPVWMRS 750
    Length:750
    Mass (Da):83,700
    Last modified:July 27, 2011 - v1
    Checksum:iA22014DC6A57869F
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002786 Genomic DNA. Translation: AEF42613.1.
    RefSeqiYP_004495413.1. NC_015564.1.

    Genome annotation databases

    EnsemblBacteriaiAEF42613; AEF42613; AS9A_4180.
    GeneIDi10636345.
    KEGGiasd:AS9A_4180.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002786 Genomic DNA. Translation: AEF42613.1 .
    RefSeqi YP_004495413.1. NC_015564.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEF42613 ; AEF42613 ; AS9A_4180 .
    GeneIDi 10636345.
    KEGGi asd:AS9A_4180.

    Phylogenomic databases

    KOi K01971.
    OMAi SKGIHLY.

    Enzyme and pathway databases

    BioCyci ASUB443218:GH9R-4219-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of Amycolicicoccus subflavus DQS3-9A1T, an actinomycete isolated from crude oil-polluted soil."
      Cai M., Chen W.M., Nie Y., Chi C.Q., Wang Y.N., Tang Y.Q., Li G.Y., Wu X.L.
      J. Bacteriol. 193:4538-4539(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DSM 45089 / DQS3-9A1Imported.

    Entry informationi

    Entry nameiF6EK72_AMYSD
    AccessioniPrimary (citable) accession number: F6EK72
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 27, 2011
    Last sequence update: July 27, 2011
    Last modified: October 1, 2014
    This is version 14 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3