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F6EK72 (F6EK72_AMYSD) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 13. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:ligD EMBL AEF42613.1
Ordered Locus Names:AS9A_4180 EMBL AEF42613.1
OrganismAmycolicicoccus subflavus (strain DSM 45089 / DQS3-9A1) [Complete proteome] [HAMAP] EMBL AEF42613.1
Taxonomic identifier443218 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeAmycolicicoccus

Protein attributes

Sequence length750 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Sequences

Sequence LengthMass (Da)Tools
F6EK72 [UniParc].

Last modified July 27, 2011. Version 1.
Checksum: A22014DC6A57869F

FASTA75083,700
        10         20         30         40         50         60 
MSKLVIDGYT VALTHLDKVL YPETGTTKGE IIAYYEAIAS VMLPHIRDRP ATRKRWPDGV 

        70         80         90        100        110        120 
TATPFFEKNI PFSAPDWIPR LPLEHKSRTV TYPLLNSTAA LVWIGQQAAL EVHVPQWIAR 

       130        140        150        160        170        180 
SGKPGPANRI VFDLDPGPGT TLADCAVVAK RIREIFREIG LPVYPVTSGS KGLHLYVPLV 

       190        200        210        220        230        240 
DPVSSAQASR VAQSVAASLE RALPELVTAT MSKAARPGKI FVDWSQNSAA KTTIAPYSLR 

       250        260        270        280        290        300 
GQSHPYVAAP RSWEELDDPH IAHLTFSDVL RRVDEFGDLL SPERPRPSES GPDRLALYRA 

       310        320        330        340        350        360 
KRDRALTPEP VPEPSENLKE NESEPLFVIQ EHHARRLHYD FRLERDGVLV SWAVPKNIPD 

       370        380        390        400        410        420 
TPDVNHLAVQ TEEHPMAYGS FAGEIPRGQY GAGEVKIWDR GTYTLEKWRD DEVIVELHGK 

       430        440        450        460        470        480 
RAQGRYALIK TGGKNWLMHK MKAPDANRRV RGIPRGLSPM LAKSASIKRL DAGEWAFEGK 

       490        500        510        520        530        540 
WDGYRAIAEI SEGTVRLLSR SGIDVTRDYP QLRQLSEDLG GHEVVLDGEL VGFGEEGVTS 

       550        560        570        580        590        600 
FARLREAPRE ATYLVFDVLY LDGTSLTRKP WSDRRKVLEA VAGLLRCASV PPLLTGSAED 

       610        620        630        640        650        660 
AIAESVQRGW EGVIAKRRDS IYLPGQRGTA WLKHKNWRTQ NVVVGGWKPG EGGHGGGIGA 

       670        680        690        700        710        720 
LLVGVMRDGK LRYAGRVGTG WSEKQRAELL ERLTLLVQEK SPFADWASEP ESSETQLRDV 

       730        740        750 
VWVRPEMEGT VRFQEWTSAR RLRHPVWMRS 

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References

[1]"Complete genome sequence of Amycolicicoccus subflavus DQS3-9A1T, an actinomycete isolated from crude oil-polluted soil."
Cai M., Chen W.M., Nie Y., Chi C.Q., Wang Y.N., Tang Y.Q., Li G.Y., Wu X.L.
J. Bacteriol. 193:4538-4539(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 45089 / DQS3-9A1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002786 Genomic DNA. Translation: AEF42613.1.
RefSeqYP_004495413.1. NC_015564.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEF42613; AEF42613; AS9A_4180.
GeneID10636345.
KEGGasd:AS9A_4180.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.
OMASKGIHLY.

Enzyme and pathway databases

BioCycASUB443218:GH9R-4219-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF6EK72_AMYSD
AccessionPrimary (citable) accession number: F6EK72
Entry history
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: April 16, 2014
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)