F6EK69 (F6EK69_AMYSD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA ligase EMBL AEF42610.1

Gene names

Ordered Locus Names:

AS9A_4177 EMBL AEF42610.1

Organism

Amycolicicoccus subflavus (strain DSM 45089 / DQS3-9A1) [Complete proteome] [HAMAP]

Taxonomic identifier

443218 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Mycobacteriaceae › Amycolicicoccus › Amycolicicoccus subflavus

Protein attributes

Sequence length	352 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL AEF42610.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F6EK69 [UniParc]. Last modified July 27, 2011. Version 1. Checksum: 8DA503B3F3D21B5D	FASTA	352	39,044
	10 20 30 40 50 60 MQLPVMPPLA PMLAKAAATV PEQAPDASAE PTWLYEPKWD GFRAIVFRDG DDVVIGSRGG 70 80 90 100 110 120 KDLSRYFPEV VTAVRDELPG RCVVDGEIVV PQSTEEGTRL DWEALSARIH PAERRVRQLS 130 140 150 160 170 180 VDTPALFVGF DLLAHHDRSL LDAPFGERRG MLTELAAAEI GPARCHVTRA TNDAAVAQHW 190 200 210 220 230 240 FETFEGAGLD GVIAKRLASR YLPNKRELVK VKHSRTAEAV VIGYRPHKSQ PGVGSVLLGL 250 260 270 280 290 300 YDGDELKMVG GMSAFTNAKR IKIQEDLDGI RSGDRAEGEV SRWRTSADAG FVPVRPERVA 310 320 330 340 350 EVAYDQMEGD RFRHAVRLLR WRPDRDPRSC TYDQLEVPVR YDLADVLEGS AR

References

[1]

"Complete genome sequence of Amycolicicoccus subflavus DQS3-9A1T, an actinomycete isolated from crude oil-polluted soil." Cai M., Chen W.M., Nie Y., Chi C.Q., Wang Y.N., Tang Y.Q., Li G.Y., Wu X.L. J. Bacteriol. 193:4538-4539(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 45089 / DQS3-9A1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002786 Genomic DNA. Translation: AEF42610.1.
RefSeq	YP_004495410.1. NC_015564.1.
3D structure databases
ProteinModelPortal	F6EK69.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEF42610; AEF42610; AS9A_4177.
GeneID	10636342.
KEGG	asd:AS9A_4177.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01971.
Enzyme and pathway databases
BioCyc	ASUB443218:GH9R-4216-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

F6EK69_AMYSD

Accession

Primary (citable) accession number: F6EK69

Entry history

Integrated into UniProtKB/TrEMBL:	July 27, 2011
Last sequence update:	July 27, 2011
Last modified:	April 3, 2013
This is version 10 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)