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F6EK69

- F6EK69_AMYSD

UniProt

F6EK69 - F6EK69_AMYSD

Protein
Submitted name:

DNA ligase

Gene

AS9A_4177

Organism
Amycolicicoccus subflavus (strain DSM 45089 / DQS3-9A1)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 12 (01 Oct 2014)
      Sequence version 1 (27 Jul 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciASUB443218:GH9R-4216-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligaseImported
    Gene namesi
    Ordered Locus Names:AS9A_4177Imported
    OrganismiAmycolicicoccus subflavus (strain DSM 45089 / DQS3-9A1)Imported
    Taxonomic identifieri443218 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeAmycolicicoccus
    ProteomesiUP000009235: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliF6EK69.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.
    OMAiYRPHKSQ.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F6EK69-1 [UniParc]FASTAAdd to Basket

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    MQLPVMPPLA PMLAKAAATV PEQAPDASAE PTWLYEPKWD GFRAIVFRDG    50
    DDVVIGSRGG KDLSRYFPEV VTAVRDELPG RCVVDGEIVV PQSTEEGTRL 100
    DWEALSARIH PAERRVRQLS VDTPALFVGF DLLAHHDRSL LDAPFGERRG 150
    MLTELAAAEI GPARCHVTRA TNDAAVAQHW FETFEGAGLD GVIAKRLASR 200
    YLPNKRELVK VKHSRTAEAV VIGYRPHKSQ PGVGSVLLGL YDGDELKMVG 250
    GMSAFTNAKR IKIQEDLDGI RSGDRAEGEV SRWRTSADAG FVPVRPERVA 300
    EVAYDQMEGD RFRHAVRLLR WRPDRDPRSC TYDQLEVPVR YDLADVLEGS 350
    AR 352
    Length:352
    Mass (Da):39,044
    Last modified:July 27, 2011 - v1
    Checksum:i8DA503B3F3D21B5D
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002786 Genomic DNA. Translation: AEF42610.1.
    RefSeqiYP_004495410.1. NC_015564.1.

    Genome annotation databases

    EnsemblBacteriaiAEF42610; AEF42610; AS9A_4177.
    GeneIDi10636342.
    KEGGiasd:AS9A_4177.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002786 Genomic DNA. Translation: AEF42610.1 .
    RefSeqi YP_004495410.1. NC_015564.1.

    3D structure databases

    ProteinModelPortali F6EK69.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEF42610 ; AEF42610 ; AS9A_4177 .
    GeneIDi 10636342.
    KEGGi asd:AS9A_4177.

    Phylogenomic databases

    KOi K01971.
    OMAi YRPHKSQ.

    Enzyme and pathway databases

    BioCyci ASUB443218:GH9R-4216-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of Amycolicicoccus subflavus DQS3-9A1T, an actinomycete isolated from crude oil-polluted soil."
      Cai M., Chen W.M., Nie Y., Chi C.Q., Wang Y.N., Tang Y.Q., Li G.Y., Wu X.L.
      J. Bacteriol. 193:4538-4539(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DSM 45089 / DQS3-9A1Imported.

    Entry informationi

    Entry nameiF6EK69_AMYSD
    AccessioniPrimary (citable) accession number: F6EK69
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 27, 2011
    Last sequence update: July 27, 2011
    Last modified: October 1, 2014
    This is version 12 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3