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F6EK06

- F6EK06_AMYSD

UniProt

F6EK06 - F6EK06_AMYSD

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Protein
Submitted name: Putative ATP-dependent DNA ligase
Gene
AS9A_2917
Organism
Amycolicicoccus subflavus (strain DSM 45089 / DQS3-9A1)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciASUB443218:GH9R-2949-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative ATP-dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:AS9A_2917Imported
OrganismiAmycolicicoccus subflavus (strain DSM 45089 / DQS3-9A1)Imported
Taxonomic identifieri443218 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeAmycolicicoccus
ProteomesiUP000009235: Chromosome

Structurei

3D structure databases

ProteinModelPortaliF6EK06.

Family & Domainsi

Phylogenomic databases

KOiK01971.
OMAiHERTADC.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 2 hits.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F6EK06-1 [UniParc]FASTAAdd to Basket

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MLAKAAAELP RADGLCYEPK WDGFRCIVFR DGDDIELGSR NDRPLTRYFP    50
ELVDVLRHAV PQRCVIDGEI VIVTDRGLDF DLLQLRLHPA ASRVTKLAGE 100
TPSSFVAFDM LALGDDDLTT QPFDTRRRHL AAAVTTGPHI HLTPMTSDVA 150
VAQDWFTRFE GAGFDGVMVK SASLPYEQNK RTMIKVKHER SADCVVAGFR 200
WHKDGEGVGS LLLGLFDDAG TLHHVGVASS FTAVRRRSLV DELAPLREGA 250
LENHPWREWA DAQAAATGRM PGGQSRWSAG KDLSWEPLRT ELVAEVRYEH 300
VQSGRFRHGG RLVRFRSDRT PESCTYAQLD EVAPAELAEI FAVPS 345
Length:345
Mass (Da):38,329
Last modified:July 27, 2011 - v1
Checksum:i5C0BC85A875FCFAE
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002786 Genomic DNA. Translation: AEF41364.1.
RefSeqiYP_004494164.1. NC_015564.1.

Genome annotation databases

EnsemblBacteriaiAEF41364; AEF41364; AS9A_2917.
GeneIDi10635089.
KEGGiasd:AS9A_2917.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002786 Genomic DNA. Translation: AEF41364.1 .
RefSeqi YP_004494164.1. NC_015564.1.

3D structure databases

ProteinModelPortali F6EK06.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AEF41364 ; AEF41364 ; AS9A_2917 .
GeneIDi 10635089.
KEGGi asd:AS9A_2917.

Phylogenomic databases

KOi K01971.
OMAi HERTADC.

Enzyme and pathway databases

BioCyci ASUB443218:GH9R-2949-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 2 hits.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of Amycolicicoccus subflavus DQS3-9A1T, an actinomycete isolated from crude oil-polluted soil."
    Cai M., Chen W.M., Nie Y., Chi C.Q., Wang Y.N., Tang Y.Q., Li G.Y., Wu X.L.
    J. Bacteriol. 193:4538-4539(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 45089 / DQS3-9A1.

Entry informationi

Entry nameiF6EK06_AMYSD
AccessioniPrimary (citable) accession number: F6EK06
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: May 14, 2014
This is version 12 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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