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F6EK06 (F6EK06_AMYSD) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 12. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:AS9A_2917 EMBL AEF41364.1
OrganismAmycolicicoccus subflavus (strain DSM 45089 / DQS3-9A1) [Complete proteome] [HAMAP] EMBL AEF41364.1
Taxonomic identifier443218 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeAmycolicicoccus

Protein attributes

Sequence length345 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Sequences

Sequence LengthMass (Da)Tools
F6EK06 [UniParc].

Last modified July 27, 2011. Version 1.
Checksum: 5C0BC85A875FCFAE

FASTA34538,329
        10         20         30         40         50         60 
MLAKAAAELP RADGLCYEPK WDGFRCIVFR DGDDIELGSR NDRPLTRYFP ELVDVLRHAV 

        70         80         90        100        110        120 
PQRCVIDGEI VIVTDRGLDF DLLQLRLHPA ASRVTKLAGE TPSSFVAFDM LALGDDDLTT 

       130        140        150        160        170        180 
QPFDTRRRHL AAAVTTGPHI HLTPMTSDVA VAQDWFTRFE GAGFDGVMVK SASLPYEQNK 

       190        200        210        220        230        240 
RTMIKVKHER SADCVVAGFR WHKDGEGVGS LLLGLFDDAG TLHHVGVASS FTAVRRRSLV 

       250        260        270        280        290        300 
DELAPLREGA LENHPWREWA DAQAAATGRM PGGQSRWSAG KDLSWEPLRT ELVAEVRYEH 

       310        320        330        340 
VQSGRFRHGG RLVRFRSDRT PESCTYAQLD EVAPAELAEI FAVPS 

« Hide

References

[1]"Complete genome sequence of Amycolicicoccus subflavus DQS3-9A1T, an actinomycete isolated from crude oil-polluted soil."
Cai M., Chen W.M., Nie Y., Chi C.Q., Wang Y.N., Tang Y.Q., Li G.Y., Wu X.L.
J. Bacteriol. 193:4538-4539(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 45089 / DQS3-9A1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002786 Genomic DNA. Translation: AEF41364.1.
RefSeqYP_004494164.1. NC_015564.1.

3D structure databases

ProteinModelPortalF6EK06.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEF41364; AEF41364; AS9A_2917.
GeneID10635089.
KEGGasd:AS9A_2917.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.
OMAHERTADC.

Enzyme and pathway databases

BioCycASUB443218:GH9R-2949-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 2 hits.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF6EK06_AMYSD
AccessionPrimary (citable) accession number: F6EK06
Entry history
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: May 14, 2014
This is version 12 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)