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Protein
Submitted name:

Putative ATP-dependent DNA ligase

Gene

AS9A_2917

Organism
Amycolicicoccus subflavus (strain DSM 45089 / DQS3-9A1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciASUB443218:GH9R-2949-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative ATP-dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:AS9A_2917Imported
OrganismiAmycolicicoccus subflavus (strain DSM 45089 / DQS3-9A1)Imported
Taxonomic identifieri443218 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeAmycolicicoccus
ProteomesiUP000009235 Componenti: Chromosome

Structurei

3D structure databases

ProteinModelPortaliF6EK06.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

OMAiHERTADC.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 2 hits.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F6EK06-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLAKAAAELP RADGLCYEPK WDGFRCIVFR DGDDIELGSR NDRPLTRYFP
60 70 80 90 100
ELVDVLRHAV PQRCVIDGEI VIVTDRGLDF DLLQLRLHPA ASRVTKLAGE
110 120 130 140 150
TPSSFVAFDM LALGDDDLTT QPFDTRRRHL AAAVTTGPHI HLTPMTSDVA
160 170 180 190 200
VAQDWFTRFE GAGFDGVMVK SASLPYEQNK RTMIKVKHER SADCVVAGFR
210 220 230 240 250
WHKDGEGVGS LLLGLFDDAG TLHHVGVASS FTAVRRRSLV DELAPLREGA
260 270 280 290 300
LENHPWREWA DAQAAATGRM PGGQSRWSAG KDLSWEPLRT ELVAEVRYEH
310 320 330 340
VQSGRFRHGG RLVRFRSDRT PESCTYAQLD EVAPAELAEI FAVPS
Length:345
Mass (Da):38,329
Last modified:July 26, 2011 - v1
Checksum:i5C0BC85A875FCFAE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002786 Genomic DNA. Translation: AEF41364.1.
RefSeqiYP_004494164.1. NC_015564.1.

Genome annotation databases

EnsemblBacteriaiAEF41364; AEF41364; AS9A_2917.
KEGGiasd:AS9A_2917.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002786 Genomic DNA. Translation: AEF41364.1.
RefSeqiYP_004494164.1. NC_015564.1.

3D structure databases

ProteinModelPortaliF6EK06.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEF41364; AEF41364; AS9A_2917.
KEGGiasd:AS9A_2917.

Phylogenomic databases

OMAiHERTADC.

Enzyme and pathway databases

BioCyciASUB443218:GH9R-2949-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 2 hits.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of Amycolicicoccus subflavus DQS3-9A1T, an actinomycete isolated from crude oil-polluted soil."
    Cai M., Chen W.M., Nie Y., Chi C.Q., Wang Y.N., Tang Y.Q., Li G.Y., Wu X.L.
    J. Bacteriol. 193:4538-4539(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 45089 / DQS3-9A1Imported.

Entry informationi

Entry nameiF6EK06_AMYSD
AccessioniPrimary (citable) accession number: F6EK06
Entry historyi
Integrated into UniProtKB/TrEMBL: July 26, 2011
Last sequence update: July 26, 2011
Last modified: March 31, 2015
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.