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F6E7W3 (F6E7W3_SINMK) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 18. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Beta-galactosidase PIRNR PIRNR001084

Short name=Beta-gal PIRNR PIRNR001084
EC=3.2.1.23 PIRNR PIRNR001084
Gene names
Ordered Locus Names:Sinme_4624 EMBL AEG56291.1
OrganismSinorhizobium meliloti (strain AK83) [Complete proteome] [HAMAP] EMBL AEG56291.1
Taxonomic identifier693982 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium

Protein attributes

Sequence length668 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Hydrolysis of terminal non-reducing beta-D-galactose residues in beta-D-galactosides. PIRNR PIRNR001084

Sequence similarities

Belongs to the glycosyl hydrolase 42 family. PIRNR PIRNR001084

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1601Proton donor By similarity PIRSR PIRSR001084-1
Active site3311Nucleophile By similarity
Metal binding1251Zinc By similarity PIRSR PIRSR001084-3
Binding site1211Substrate By similarity PIRSR PIRSR001084-2
Binding site1591Substrate By similarity PIRSR PIRSR001084-2
Binding site3391Substrate By similarity PIRSR PIRSR001084-2

Sequences

Sequence LengthMass (Da)Tools
F6E7W3 [UniParc].

Last modified July 27, 2011. Version 1.
Checksum: 99BC68EFE293992C

FASTA66875,023
        10         20         30         40         50         60 
MPLTSPNHFN SDARTPGRLE LGVCYYPEQW PRGKWAEDAR RMVELGLSWV RIGEFAWAKI 

        70         80         90        100        110        120 
EPRSGEFHWE WLDEAIDVLG KAGLKVILGT PTAAPPKWLV NRYPEILPVD ATGAVRKFGA 

       130        140        150        160        170        180 
RRHYCFSSRR YRSEAARITE AMARRYGEHI YVHAWQTDNE YGDHDTIYSY SAEAVGAFRL 

       190        200        210        220        230        240 
WLAERYGSID ELNRAWGTSF WSMRYDSFEE IDLPNNLVEE PSPTHGVDFI RFSSDQVKSF 

       250        260        270        280        290        300 
NKAQVDIIRA HSPGRPVTHN FMSQNTDFDH YRVGEDIDIA SWDVYPMGGL LNGRLAAKDK 

       310        320        330        340        350        360 
EHYLRVGDPD QPAFNHDLYR AVGRGRVWVM EQQPGPVNWA AHNQSPADGM VRLWTWLAYA 

       370        380        390        400        410        420 
HGVDMVSYFR WRQAPFAQEQ FHAGLLLPNS EADQGYLEVA EVVAEMKRLP EGEVRGKAQV 

       430        440        450        460        470        480 
AIVLDYESRW ATRVLPQGRS YSASAVALDW YSTVARLGVD VDFIGQHSDI AGYKLILAPD 

       490        500        510        520        530        540 
LVIAEEAFVE RLTRADAKVV FGARSGSKTR DMHIPEGLPP GPLAKLIDIS VSRVESLPEF 

       550        560        570        580        590        600 
HSETVLYGNE AYEAGGWRET VRTSETVIAS FDGEYRNGAP ALVGNDKARY LAVAANGALL 

       610        620        630        640        650        660 
DKVIGDALGW AGLESLPDLG DLRVTRRGNL RFAFNFGRIP AEVPAGASAE FYVGGRTLKP 


VDVAIWRE 

« Hide

References

[1]"Exploring the symbiotic pangenome of the nitrogen-fixing bacterium Sinorhizobium meliloti."
US DOE Joint Genome Institute
Galardini M., Mengoni A., Brilli M., Pini F., Fioravanti A., Lucas S., Lapidus A., Cheng J.F., Goodwin L., Pitluck S., Land M., Hauser L., Woyke T., Mikhailova N., Ivanova N., Daligault H., Bruce D., Detter C. expand/collapse author list , Tapia R., Han C., Teshima H., Mocali S., Bazzicalupo M., Biondi E.G.
BMC Genomics 12:235-235(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: AK83.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002782 Genomic DNA. Translation: AEG56291.1.
RefSeqYP_004557171.1. NC_015596.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEG56291; AEG56291; Sinme_4624.
GeneID10730665.
KEGGsmk:Sinme_4624.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK12308.
OMAHIWLGGY.

Enzyme and pathway databases

BioCycSMEL693982:GJDT-4690-MONOMER.

Family and domain databases

Gene3D2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
3.40.50.880. 1 hit.
InterProIPR013739. Beta_galactosidase_C.
IPR013738. Beta_galactosidase_Trimer.
IPR029062. Class_I_gatase-like.
IPR013780. Glyco_hydro_13_b.
IPR003476. Glyco_hydro_42.
IPR013529. Glyco_hydro_42_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PfamPF02449. Glyco_hydro_42. 1 hit.
PF08533. Glyco_hydro_42C. 1 hit.
PF08532. Glyco_hydro_42M. 1 hit.
[Graphical view]
PIRSFPIRSF001084. B-galactosidase. 1 hit.
SUPFAMSSF51445. SSF51445. 1 hit.
SSF52317. SSF52317. 1 hit.
ProtoNetSearch...

Entry information

Entry nameF6E7W3_SINMK
AccessionPrimary (citable) accession number: F6E7W3
Entry history
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: July 9, 2014
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)