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F6DX20 (F6DX20_SINMK) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 14. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Endonuclease III EMBL AEG55200.1
EC=4.2.99.18 EMBL AEG55200.1
Gene names
Ordered Locus Names:Sinme_3495 EMBL AEG55200.1
OrganismSinorhizobium meliloti (strain AK83) [Complete proteome] [HAMAP]
Taxonomic identifier693982 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Sinorhizobium/Ensifer group › Sinorhizobium ›

Protein attributes

Sequence length263 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
F6DX20 [UniParc].

Last modified July 27, 2011. Version 1.
Checksum: 44E3D753C5705365

FASTA26329,261
        10         20         30         40         50         60 
MKNVKLKSPP QEPKPAKATT RRTGGRTGPR SAYRTAEVEE IFRRFSVQRP EPKGELEHVN 

        70         80         90        100        110        120 
PFTLVVAVAL SAQATDAGVN KATRQLFAVA DTPEKMLALG EERVRDYIKT IGLYRNKAKN 

       130        140        150        160        170        180 
VIALSEKLIA DFGGEVPRTR EELVTLPGVG RKTANVVLSM AFGQPTMAVD THIFRIANRI 

       190        200        210        220        230        240 
RLAPGKTPDE VEAHLLRVIP EHYLFHAHHW LILHGRYVCK ARRPECERCV IADLCKSPEK 

       250        260 
TCDIPAPLVE LPPQAISVAA RSR

« Hide

References

[1]"Exploring the symbiotic pangenome of the nitrogen-fixing bacterium Sinorhizobium meliloti."
US DOE Joint Genome Institute
Galardini M., Mengoni A., Brilli M., Pini F., Fioravanti A., Lucas S., Lapidus A., Cheng J.F., Goodwin L., Pitluck S., Land M., Hauser L., Woyke T., Mikhailova N., Ivanova N., Daligault H., Bruce D., Detter C. expand/collapse author list , Tapia R., Han C., Teshima H., Mocali S., Bazzicalupo M., Biondi E.G.
BMC Genomics 12:235-235(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: AK83.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP002781 Genomic DNA. Translation: AEG55200.1.
RefSeqYP_004550814.1. NC_015590.1.

3D structure databases

ProteinModelPortalF6DX20.
SMRF6DX20. Positions 37-240.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEG55200; AEG55200; Sinme_3495.
GeneID10728114.
KEGGsmk:Sinme_3495.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK10773.

Enzyme and pathway databases

BioCycSMEL693982:GJDT-3556-MONOMER.

Family and domain databases

Gene3D1.10.1670.10. 1 hit.
1.10.340.30. 1 hit.
InterProIPR011257. DNA_glycosylase.
IPR004036. Endonuclease-III_CS2.
IPR005759. Endonuclease-III_Nth.
IPR003651. Endouclease3_FeS-loop_motif.
IPR003265. HhH-GPD_domain.
IPR000445. HhH_motif.
IPR003583. Hlx-hairpin-Hlx_DNA-bd_motif.
IPR023170. HTH_base_excis_C.
[Graphical view]
PfamPF10576. EndIII_4Fe-2S. 1 hit.
PF00633. HHH. 1 hit.
PF00730. HhH-GPD. 1 hit.
[Graphical view]
PIRSFPIRSF001435. Nth. 1 hit.
SMARTSM00478. ENDO3c. 1 hit.
SM00525. FES. 1 hit.
SM00278. HhH1. 1 hit.
[Graphical view]
SUPFAMSSF48150. DNA_glycsylse. 1 hit.
TIGRFAMsTIGR01083. nth. 1 hit.
PROSITEPS01155. ENDONUCLEASE_III_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF6DX20_SINMK
AccessionPrimary (citable) accession number: F6DX20
Entry history
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: May 1, 2013
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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