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F6DU38

- F6DU38_DESRL

UniProt

F6DU38 - F6DU38_DESRL

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Protein
Submitted name:

DNA polymerase LigD, ligase domain protein

Gene

Desru_1852

Organism
Desulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIB 8452 / DL)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, ligase domain proteinImported
Gene namesi
Ordered Locus Names:Desru_1852Imported
OrganismiDesulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIB 8452 / DL)Imported
Taxonomic identifieri696281 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesPeptococcaceaeDesulfotomaculum
ProteomesiUP000009234: Chromosome

Structurei

3D structure databases

ProteinModelPortaliF6DU38.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK01971.
OMAiGKPSFHE.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F6DU38-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MRQEKELPNL KPMLAVKAAP FDSDDYLYEI KWDGYRALAY LNQQTLLYSR
60 70 80 90 100
NQLDLTKSFP DLQGLHLRVK QKPLILDGEI VVLKDGKPSF SALQSRGKLS
110 120 130 140 150
DPLKIRRLCQ QNPATFVVFD VLFSNGRNLM NLPLLQRKKF LEEMAEQGPD
160 170 180 190 200
LIVSQYVLGS GCEFFRVVKA AGLEGMVAKR LDSPYLPGKR SGYWKKIRWV
210 220 230 240 250
QSADLVICGW EKGEGQRLLG ALILGVPEKG GWVYMGKVGT GFSREEEKRI
260 270 280 290 300
ITLLKPLEGH PPFSSLPDED FRKTVWVCPE LVCEVTFSEI SPEGRLRHPS
310
YKGLRKDKKA EECGHL
Length:316
Mass (Da):35,897
Last modified:July 27, 2011 - v1
Checksum:i47FF43D12998D551
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002780 Genomic DNA. Translation: AEG60113.1.
RefSeqiYP_004545399.1. NC_015589.1.

Genome annotation databases

EnsemblBacteriaiAEG60113; AEG60113; Desru_1852.
GeneIDi10738246.
KEGGidru:Desru_1852.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002780 Genomic DNA. Translation: AEG60113.1 .
RefSeqi YP_004545399.1. NC_015589.1.

3D structure databases

ProteinModelPortali F6DU38.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AEG60113 ; AEG60113 ; Desru_1852 .
GeneIDi 10738246.
KEGGi dru:Desru_1852.

Phylogenomic databases

KOi K01971.
OMAi GKPSFHE.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 23193 / DSM 2154 / NCIB 8452 / DLImported.

Entry informationi

Entry nameiF6DU38_DESRL
AccessioniPrimary (citable) accession number: F6DU38
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: October 1, 2014
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3