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F6DU38

- F6DU38_DESRL

UniProt

F6DU38 - F6DU38_DESRL

Protein
Submitted name:

DNA polymerase LigD, ligase domain protein

Gene

Desru_1852

Organism
Desulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIB 8452 / DL)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 17 (01 Oct 2014)
      Sequence version 1 (27 Jul 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA polymerase LigD, ligase domain proteinImported
    Gene namesi
    Ordered Locus Names:Desru_1852Imported
    OrganismiDesulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIB 8452 / DL)Imported
    Taxonomic identifieri696281 [NCBI]
    Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesPeptococcaceaeDesulfotomaculum
    ProteomesiUP000009234: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliF6DU38.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.
    OMAiGKPSFHE.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F6DU38-1 [UniParc]FASTAAdd to Basket

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    MRQEKELPNL KPMLAVKAAP FDSDDYLYEI KWDGYRALAY LNQQTLLYSR    50
    NQLDLTKSFP DLQGLHLRVK QKPLILDGEI VVLKDGKPSF SALQSRGKLS 100
    DPLKIRRLCQ QNPATFVVFD VLFSNGRNLM NLPLLQRKKF LEEMAEQGPD 150
    LIVSQYVLGS GCEFFRVVKA AGLEGMVAKR LDSPYLPGKR SGYWKKIRWV 200
    QSADLVICGW EKGEGQRLLG ALILGVPEKG GWVYMGKVGT GFSREEEKRI 250
    ITLLKPLEGH PPFSSLPDED FRKTVWVCPE LVCEVTFSEI SPEGRLRHPS 300
    YKGLRKDKKA EECGHL 316
    Length:316
    Mass (Da):35,897
    Last modified:July 27, 2011 - v1
    Checksum:i47FF43D12998D551
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002780 Genomic DNA. Translation: AEG60113.1.
    RefSeqiYP_004545399.1. NC_015589.1.

    Genome annotation databases

    EnsemblBacteriaiAEG60113; AEG60113; Desru_1852.
    GeneIDi10738246.
    KEGGidru:Desru_1852.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002780 Genomic DNA. Translation: AEG60113.1 .
    RefSeqi YP_004545399.1. NC_015589.1.

    3D structure databases

    ProteinModelPortali F6DU38.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEG60113 ; AEG60113 ; Desru_1852 .
    GeneIDi 10738246.
    KEGGi dru:Desru_1852.

    Phylogenomic databases

    KOi K01971.
    OMAi GKPSFHE.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 23193 / DSM 2154 / NCIB 8452 / DLImported.

    Entry informationi

    Entry nameiF6DU38_DESRL
    AccessioniPrimary (citable) accession number: F6DU38
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 27, 2011
    Last sequence update: July 27, 2011
    Last modified: October 1, 2014
    This is version 17 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3