F6DU38 (F6DU38_DESRL) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA polymerase LigD, ligase domain protein EMBL AEG60113.1

Gene names

Ordered Locus Names:

Desru_1852 EMBL AEG60113.1

Organism

Desulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIB 8452 / DL) [Complete proteome] [HAMAP] EMBL AEG60113.1

Taxonomic identifier

696281 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Firmicutes › Clostridia › Clostridiales › Peptococcaceae › Desulfotomaculum › Desulfotomaculum ruminis

Protein attributes

Sequence length	316 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL AEG60113.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F6DU38 [UniParc]. Last modified July 27, 2011. Version 1. Checksum: 47FF43D12998D551	FASTA	316	35,897
	10 20 30 40 50 60 MRQEKELPNL KPMLAVKAAP FDSDDYLYEI KWDGYRALAY LNQQTLLYSR NQLDLTKSFP 70 80 90 100 110 120 DLQGLHLRVK QKPLILDGEI VVLKDGKPSF SALQSRGKLS DPLKIRRLCQ QNPATFVVFD 130 140 150 160 170 180 VLFSNGRNLM NLPLLQRKKF LEEMAEQGPD LIVSQYVLGS GCEFFRVVKA AGLEGMVAKR 190 200 210 220 230 240 LDSPYLPGKR SGYWKKIRWV QSADLVICGW EKGEGQRLLG ALILGVPEKG GWVYMGKVGT 250 260 270 280 290 300 GFSREEEKRI ITLLKPLEGH PPFSSLPDED FRKTVWVCPE LVCEVTFSEI SPEGRLRHPS 310 YKGLRKDKKA EECGHL

References

[1]

"Complete sequence of Desulfotomaculum ruminis DSM 2154." Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Lu M., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Mikhailova N., Pagani I., Stams A.J.M., Plugge C.M. , Muyzer G., Kuever J., Parshina S.N., Ivanova A.E., Nazina T.N., Brambilla E., Spring S., Klenk H.-P., Woyke T. Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 23193 / DSM 2154 / NCIB 8452 / DL.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002780 Genomic DNA. Translation: AEG60113.1.
RefSeq	YP_004545399.1. NC_015589.1.
3D structure databases
ProteinModelPortal	F6DU38.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEG60113; AEG60113; Desru_1852.
GeneID	10738246.
KEGG	dru:Desru_1852.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01971.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

F6DU38_DESRL

Accession

Primary (citable) accession number: F6DU38

Entry history

Integrated into UniProtKB/TrEMBL:	July 27, 2011
Last sequence update:	July 27, 2011
Last modified:	April 3, 2013
This is version 12 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)