Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

F6DU38 (F6DU38_DESRL) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 15. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
Gene names
Ordered Locus Names:Desru_1852 EMBL AEG60113.1
OrganismDesulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIB 8452 / DL) [Complete proteome] [HAMAP] EMBL AEG60113.1
Taxonomic identifier696281 [NCBI]
Taxonomic lineageBacteriaFirmicutesClostridiaClostridialesPeptococcaceaeDesulfotomaculum

Protein attributes

Sequence length316 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL AEG60113.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
F6DU38 [UniParc].

Last modified July 27, 2011. Version 1.
Checksum: 47FF43D12998D551

FASTA31635,897
        10         20         30         40         50         60 
MRQEKELPNL KPMLAVKAAP FDSDDYLYEI KWDGYRALAY LNQQTLLYSR NQLDLTKSFP 

        70         80         90        100        110        120 
DLQGLHLRVK QKPLILDGEI VVLKDGKPSF SALQSRGKLS DPLKIRRLCQ QNPATFVVFD 

       130        140        150        160        170        180 
VLFSNGRNLM NLPLLQRKKF LEEMAEQGPD LIVSQYVLGS GCEFFRVVKA AGLEGMVAKR 

       190        200        210        220        230        240 
LDSPYLPGKR SGYWKKIRWV QSADLVICGW EKGEGQRLLG ALILGVPEKG GWVYMGKVGT 

       250        260        270        280        290        300 
GFSREEEKRI ITLLKPLEGH PPFSSLPDED FRKTVWVCPE LVCEVTFSEI SPEGRLRHPS 

       310 
YKGLRKDKKA EECGHL 

« Hide

References

[1]"Complete sequence of Desulfotomaculum ruminis DSM 2154."
Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Lu M., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Mikhailova N., Pagani I., Stams A.J.M., Plugge C.M. expand/collapse author list , Muyzer G., Kuever J., Parshina S.N., Ivanova A.E., Nazina T.N., Brambilla E., Spring S., Klenk H.-P., Woyke T.
Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 23193 / DSM 2154 / NCIB 8452 / DL.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002780 Genomic DNA. Translation: AEG60113.1.
RefSeqYP_004545399.1. NC_015589.1.

3D structure databases

ProteinModelPortalF6DU38.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEG60113; AEG60113; Desru_1852.
GeneID10738246.
KEGGdru:Desru_1852.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.
OMAVEVKYGQ.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF6DU38_DESRL
AccessionPrimary (citable) accession number: F6DU38
Entry history
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: April 16, 2014
This is version 15 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)