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F6DB89 (F6DB89_THICA) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 18. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=1.1.1.42 EMBL AEG30829.1
Gene names
Ordered Locus Names:Thicy_0053 EMBL AEG30829.1
OrganismThioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1) [Complete proteome] [HAMAP] EMBL AEG30829.1
Taxonomic identifier717773 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaThiotrichalesPiscirickettsiaceaeThioalkalimicrobium

Protein attributes

Sequence length749 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Cofactor

Binds 1 magnesium or manganese ion per subunit By similarity. PIRSR PIRSR009407-3

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Region133 – 1408Substrate binding By similarity PIRSR PIRSR009407-2

Sites

Metal binding3511Magnesium or manganese By similarity
Metal binding5491Magnesium or manganese By similarity
Metal binding5531Magnesium or manganese By similarity
Binding site1461Substrate By similarity PIRSR PIRSR009407-2
Binding site5481Substrate By similarity PIRSR PIRSR009407-2
Site2561Critical for catalysis By similarity PIRSR PIRSR009407-1
Site4211Critical for catalysis By similarity PIRSR PIRSR009407-1

Sequences

Sequence LengthMass (Da)Tools
F6DB89 [UniParc].

Last modified July 27, 2011. Version 1.
Checksum: 90D38103A36B7A86

FASTA74980,762
        10         20         30         40         50         60 
MTQSSTLIYT HTDEAPALAT YSFLPIIQAF TAAAGVEVTT RDISLAGRIL ANFNEYLTAE 

        70         80         90        100        110        120 
QQTVDALTEL GELAKKPAAN IIKLPNISAS IPQLTGAIAE LQAQGYAIPN YPATPQNDQE 

       130        140        150        160        170        180 
RDIKARYAKV LGSAVNPVLR EGNSDRRVAG PVKAYAKAHP HSMGVWSKDS KSHVAHMQAD 

       190        200        210        220        230        240 
DFYGSELSYV SPTEDSVRIE FHGEDGQITV LKAKTRLQAG EVIDASVMRV AALRAFLAEQ 

       250        260        270        280        290        300 
VADAKAQGVL FSLHLKATMM KVSDPIMFGH AVEVYFAQVF ERFSDTFSKL GVSTRNGLGD 

       310        320        330        340        350        360 
VYQKIQALPA AERVEIDQAL ADAMAQGPAL AMVDSDKGIS NLHVPSDVII DASMPAAIRS 

       370        380        390        400        410        420 
SGQMWNAQGQ LQDMKAIIPD RCYAGVYQQT IEFCKANGAF DPATMGTVPN VGLMAQKAEE 

       430        440        450        460        470        480 
YGSHDKTFEM PSAGSVQVIN EAGVVIFAHQ VAKGDIWRMC QTKDIAIQDW VKLAVTRARL 

       490        500        510        520        530        540 
TNTPAIFWLD AQRPHDANLI KKVENALGML DIEGLDLEIL SPVDATAKTL ARAKAGMDTI 

       550        560        570        580        590        600 
SVTGNVLRDY LTDLFPILEL GTSAKMLSIV PLLAGGGLFE TGAGGSAPKH VQQLVQENFL 

       610        620        630        640        650        660 
RWDSLGEFLA LAVSLEHLAQ QTKNSRINVL VDSLNQATSR FLQENRSPGR KVGELDNRGS 

       670        680        690        700        710        720 
HVYLATHWAQ ALAEQQVDLS LHQQFAPLAE ALQAQLDAIL AELAAVQGQP VDLGGYYHPD 

       730        740 
AKKAAAAMRP SKLFNAALAQ FAQGVSHGA 

« Hide

References

[1]"Complete sequence of Thioalkalimicrobium cyclicum ALM1."
US DOE Joint Genome Institute
Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Mikhailova N., Davenport K., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Kappler U., Woyke T.
Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 14477 / JCM 11371 / ALM1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002776 Genomic DNA. Translation: AEG30829.1.
RefSeqYP_004536308.1. NC_015581.1.

3D structure databases

ProteinModelPortalF6DB89.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEG30829; AEG30829; Thicy_0053.
GeneID10718843.
KEGGtcy:Thicy_0053.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK00031.
OMAEEQRIGD.

Family and domain databases

Gene3D3.40.718.10. 3 hits.
InterProIPR004436. Isocitrate_DH_NADP_mono.
IPR024084. IsoPropMal-DH-like_dom.
[Graphical view]
PfamPF03971. IDH. 1 hit.
[Graphical view]
PIRSFPIRSF009407. IDH_monmr. 1 hit.
TIGRFAMsTIGR00178. monomer_idh. 1 hit.
ProtoNetSearch...

Entry information

Entry nameF6DB89_THICA
AccessionPrimary (citable) accession number: F6DB89
Entry history
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: July 9, 2014
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)