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F6D9K1 (F6D9K1_THICA) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 15. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length478 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the DNA photolyase class-1 family. RuleBase RU004182

Ontologies

Sequences

Sequence LengthMass (Da)Tools
F6D9K1 [UniParc].

Last modified July 27, 2011. Version 1.
Checksum: D716FF62567AB714

FASTA47854,998
        10         20         30         40         50         60 
MNQLIWFQRD LRLNDHTPIH RALSQNEPTL FAYFHDPQQA QGEANQVWLA ASLSKLQTAL 

        70         80         90        100        110        120 
QAKNADLLVA EGEFSQAFER VLTTYNVKNV LYHFELGEPY QTIQQQALAV CQRLKVRLTP 

       130        140        150        160        170        180 
FDQAWLPPES VLTQQGNPYG VYTPFSKKVF SMLDGVPKPE GEANWSNFQP VTLENHDRQL 

       190        200        210        220        230        240 
PSRLKAIANT DWAKPLISQW KVGEQAAINQ ATHFLTTHIQ HYPERRDFPA INGTSQLSIH 

       250        260        270        280        290        300 
LHFGEISSTR LLESCRQAQA NQPGHSEAIQ SFIRQLIWRE FSRYLLFFNP GLINQAYQSK 

       310        320        330        340        350        360 
FNQIDWPEPD DQVVAWQRGL TGVPIIDAGM RQLWHTGWMH NRVRMLVGSW LTKNLNQHWL 

       370        380        390        400        410        420 
VGQAWFENTL LDADIANNVM GWQWVAGCGV DAAPYFRLFN PVVQSEKFDP QGHYIRQWLP 

       430        440        450        460        470 
ELAPLPNQLI HAPWDAAGKI KQQFPTLAAN YPLHDPNLKQ VRLDHQQRVQ ALKMMTNA 

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References

[1]"Complete sequence of Thioalkalimicrobium cyclicum ALM1."
US DOE Joint Genome Institute
Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Mikhailova N., Davenport K., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Kappler U., Woyke T.
Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 14477 / JCM 11371 / ALM1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002776 Genomic DNA. Translation: AEG30958.1.
RefSeqYP_004536437.1. NC_015581.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEG30958; AEG30958; Thicy_0182.
GeneID10718976.
KEGGtcy:Thicy_0182.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01669.
OMAAINQATH.

Family and domain databases

Gene3D3.40.50.620. 1 hit.
InterProIPR002081. Cryptochrome/DNA_photolyase_1.
IPR018394. DNA_photolyase_1_CS_C.
IPR006050. DNA_photolyase_N.
IPR005101. Photolyase_FAD-bd/Cryptochr_C.
IPR014729. Rossmann-like_a/b/a_fold.
[Graphical view]
PfamPF00875. DNA_photolyase. 1 hit.
PF03441. FAD_binding_7. 1 hit.
[Graphical view]
PRINTSPR00147. DNAPHOTLYASE.
SUPFAMSSF48173. SSF48173. 1 hit.
SSF52425. SSF52425. 1 hit.
PROSITEPS00394. DNA_PHOTOLYASES_1_1. 1 hit.
PS51645. PHR_CRY_ALPHA_BETA. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF6D9K1_THICA
AccessionPrimary (citable) accession number: F6D9K1
Entry history
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: May 14, 2014
This is version 15 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)