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F6D9K1

- F6D9K1_THICA

UniProt

F6D9K1 - F6D9K1_THICA

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Protein
Submitted name:

Deoxyribodipyrimidine photo-lyase

Gene

Thicy_0182

Organism
Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1)
Status
Unreviewed - Annotation score: 1 out of 5- Protein inferred from homologyi

Functioni

GO - Molecular functioni

  1. deoxyribodipyrimidine photo-lyase activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA repair Source: InterPro
  2. protein-chromophore linkage Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LyaseImported

Keywords - Ligandi

ChromophoreUniRule annotation, FADUniRule annotation, Flavoprotein

Names & Taxonomyi

Protein namesi
Submitted name:
Deoxyribodipyrimidine photo-lyaseImported (EC:4.1.99.3Imported)
Gene namesi
Ordered Locus Names:Thicy_0182Imported
OrganismiThioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1)Imported
Taxonomic identifieri717773 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaThiotrichalesPiscirickettsiaceaeThioalkalimicrobium
ProteomesiUP000009232: Chromosome

Family & Domainsi

Sequence similaritiesi

Belongs to the DNA photolyase class-1 family.UniRule annotation

Phylogenomic databases

KOiK01669.
OMAiAINQATH.

Family and domain databases

Gene3Di3.40.50.620. 1 hit.
InterProiIPR002081. Cryptochrome/DNA_photolyase_1.
IPR018394. DNA_photolyase_1_CS_C.
IPR006050. DNA_photolyase_N.
IPR005101. Photolyase_FAD-bd/Cryptochr_C.
IPR014729. Rossmann-like_a/b/a_fold.
[Graphical view]
PfamiPF00875. DNA_photolyase. 1 hit.
PF03441. FAD_binding_7. 1 hit.
[Graphical view]
PRINTSiPR00147. DNAPHOTLYASE.
SUPFAMiSSF48173. SSF48173. 1 hit.
SSF52425. SSF52425. 1 hit.
PROSITEiPS00394. DNA_PHOTOLYASES_1_1. 1 hit.
PS51645. PHR_CRY_ALPHA_BETA. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F6D9K1-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MNQLIWFQRD LRLNDHTPIH RALSQNEPTL FAYFHDPQQA QGEANQVWLA
60 70 80 90 100
ASLSKLQTAL QAKNADLLVA EGEFSQAFER VLTTYNVKNV LYHFELGEPY
110 120 130 140 150
QTIQQQALAV CQRLKVRLTP FDQAWLPPES VLTQQGNPYG VYTPFSKKVF
160 170 180 190 200
SMLDGVPKPE GEANWSNFQP VTLENHDRQL PSRLKAIANT DWAKPLISQW
210 220 230 240 250
KVGEQAAINQ ATHFLTTHIQ HYPERRDFPA INGTSQLSIH LHFGEISSTR
260 270 280 290 300
LLESCRQAQA NQPGHSEAIQ SFIRQLIWRE FSRYLLFFNP GLINQAYQSK
310 320 330 340 350
FNQIDWPEPD DQVVAWQRGL TGVPIIDAGM RQLWHTGWMH NRVRMLVGSW
360 370 380 390 400
LTKNLNQHWL VGQAWFENTL LDADIANNVM GWQWVAGCGV DAAPYFRLFN
410 420 430 440 450
PVVQSEKFDP QGHYIRQWLP ELAPLPNQLI HAPWDAAGKI KQQFPTLAAN
460 470
YPLHDPNLKQ VRLDHQQRVQ ALKMMTNA
Length:478
Mass (Da):54,998
Last modified:July 27, 2011 - v1
Checksum:iD716FF62567AB714
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002776 Genomic DNA. Translation: AEG30958.1.
RefSeqiYP_004536437.1. NC_015581.1.

Genome annotation databases

EnsemblBacteriaiAEG30958; AEG30958; Thicy_0182.
GeneIDi10718976.
KEGGitcy:Thicy_0182.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002776 Genomic DNA. Translation: AEG30958.1 .
RefSeqi YP_004536437.1. NC_015581.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AEG30958 ; AEG30958 ; Thicy_0182 .
GeneIDi 10718976.
KEGGi tcy:Thicy_0182.

Phylogenomic databases

KOi K01669.
OMAi AINQATH.

Family and domain databases

Gene3Di 3.40.50.620. 1 hit.
InterProi IPR002081. Cryptochrome/DNA_photolyase_1.
IPR018394. DNA_photolyase_1_CS_C.
IPR006050. DNA_photolyase_N.
IPR005101. Photolyase_FAD-bd/Cryptochr_C.
IPR014729. Rossmann-like_a/b/a_fold.
[Graphical view ]
Pfami PF00875. DNA_photolyase. 1 hit.
PF03441. FAD_binding_7. 1 hit.
[Graphical view ]
PRINTSi PR00147. DNAPHOTLYASE.
SUPFAMi SSF48173. SSF48173. 1 hit.
SSF52425. SSF52425. 1 hit.
PROSITEi PS00394. DNA_PHOTOLYASES_1_1. 1 hit.
PS51645. PHR_CRY_ALPHA_BETA. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of Thioalkalimicrobium cyclicum ALM1."
    US DOE Joint Genome Institute
    Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Mikhailova N., Davenport K., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Kappler U., Woyke T.
    Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 14477 / JCM 11371 / ALM1Imported.

Entry informationi

Entry nameiF6D9K1_THICA
AccessioniPrimary (citable) accession number: F6D9K1
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: October 29, 2014
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3