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F6D9K1

- F6D9K1_THICA

UniProt

F6D9K1 - F6D9K1_THICA

Protein
Submitted name:

Deoxyribodipyrimidine photo-lyase

Gene

Thicy_0182

Organism
Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1)
Status
Unreviewed - Annotation score: 1 out of 5- Protein inferred from homologyi
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    • History
      Entry version 17 (01 Oct 2014)
      Sequence version 1 (27 Jul 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. deoxyribodipyrimidine photo-lyase activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA repair Source: InterPro
    2. protein-chromophore linkage Source: UniProtKB-KW

    Keywords - Molecular functioni

    LyaseImported

    Keywords - Ligandi

    ChromophoreUniRule annotation, FADUniRule annotation, Flavoprotein

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Deoxyribodipyrimidine photo-lyaseImported (EC:4.1.99.3Imported)
    Gene namesi
    Ordered Locus Names:Thicy_0182Imported
    OrganismiThioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1)Imported
    Taxonomic identifieri717773 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaThiotrichalesPiscirickettsiaceaeThioalkalimicrobium
    ProteomesiUP000009232: Chromosome

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the DNA photolyase class-1 family.UniRule annotation

    Phylogenomic databases

    KOiK01669.
    OMAiAINQATH.

    Family and domain databases

    Gene3Di3.40.50.620. 1 hit.
    InterProiIPR002081. Cryptochrome/DNA_photolyase_1.
    IPR018394. DNA_photolyase_1_CS_C.
    IPR006050. DNA_photolyase_N.
    IPR005101. Photolyase_FAD-bd/Cryptochr_C.
    IPR014729. Rossmann-like_a/b/a_fold.
    [Graphical view]
    PfamiPF00875. DNA_photolyase. 1 hit.
    PF03441. FAD_binding_7. 1 hit.
    [Graphical view]
    PRINTSiPR00147. DNAPHOTLYASE.
    SUPFAMiSSF48173. SSF48173. 1 hit.
    SSF52425. SSF52425. 1 hit.
    PROSITEiPS00394. DNA_PHOTOLYASES_1_1. 1 hit.
    PS51645. PHR_CRY_ALPHA_BETA. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F6D9K1-1 [UniParc]FASTAAdd to Basket

    « Hide

    MNQLIWFQRD LRLNDHTPIH RALSQNEPTL FAYFHDPQQA QGEANQVWLA    50
    ASLSKLQTAL QAKNADLLVA EGEFSQAFER VLTTYNVKNV LYHFELGEPY 100
    QTIQQQALAV CQRLKVRLTP FDQAWLPPES VLTQQGNPYG VYTPFSKKVF 150
    SMLDGVPKPE GEANWSNFQP VTLENHDRQL PSRLKAIANT DWAKPLISQW 200
    KVGEQAAINQ ATHFLTTHIQ HYPERRDFPA INGTSQLSIH LHFGEISSTR 250
    LLESCRQAQA NQPGHSEAIQ SFIRQLIWRE FSRYLLFFNP GLINQAYQSK 300
    FNQIDWPEPD DQVVAWQRGL TGVPIIDAGM RQLWHTGWMH NRVRMLVGSW 350
    LTKNLNQHWL VGQAWFENTL LDADIANNVM GWQWVAGCGV DAAPYFRLFN 400
    PVVQSEKFDP QGHYIRQWLP ELAPLPNQLI HAPWDAAGKI KQQFPTLAAN 450
    YPLHDPNLKQ VRLDHQQRVQ ALKMMTNA 478
    Length:478
    Mass (Da):54,998
    Last modified:July 27, 2011 - v1
    Checksum:iD716FF62567AB714
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002776 Genomic DNA. Translation: AEG30958.1.
    RefSeqiWP_013834741.1. NC_015581.1.
    YP_004536437.1. NC_015581.1.

    Genome annotation databases

    EnsemblBacteriaiAEG30958; AEG30958; Thicy_0182.
    GeneIDi10718976.
    KEGGitcy:Thicy_0182.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002776 Genomic DNA. Translation: AEG30958.1 .
    RefSeqi WP_013834741.1. NC_015581.1.
    YP_004536437.1. NC_015581.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEG30958 ; AEG30958 ; Thicy_0182 .
    GeneIDi 10718976.
    KEGGi tcy:Thicy_0182.

    Phylogenomic databases

    KOi K01669.
    OMAi AINQATH.

    Family and domain databases

    Gene3Di 3.40.50.620. 1 hit.
    InterProi IPR002081. Cryptochrome/DNA_photolyase_1.
    IPR018394. DNA_photolyase_1_CS_C.
    IPR006050. DNA_photolyase_N.
    IPR005101. Photolyase_FAD-bd/Cryptochr_C.
    IPR014729. Rossmann-like_a/b/a_fold.
    [Graphical view ]
    Pfami PF00875. DNA_photolyase. 1 hit.
    PF03441. FAD_binding_7. 1 hit.
    [Graphical view ]
    PRINTSi PR00147. DNAPHOTLYASE.
    SUPFAMi SSF48173. SSF48173. 1 hit.
    SSF52425. SSF52425. 1 hit.
    PROSITEi PS00394. DNA_PHOTOLYASES_1_1. 1 hit.
    PS51645. PHR_CRY_ALPHA_BETA. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of Thioalkalimicrobium cyclicum ALM1."
      US DOE Joint Genome Institute
      Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Mikhailova N., Davenport K., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Kappler U., Woyke T.
      Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DSM 14477 / JCM 11371 / ALM1Imported.

    Entry informationi

    Entry nameiF6D9K1_THICA
    AccessioniPrimary (citable) accession number: F6D9K1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 27, 2011
    Last sequence update: July 27, 2011
    Last modified: October 1, 2014
    This is version 17 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3