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F6D9K1

- F6D9K1_THICA

UniProt

F6D9K1 - F6D9K1_THICA

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Protein
Submitted name:

Deoxyribodipyrimidine photo-lyase

Gene
Thicy_0182
Organism
Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein inferred from homologyi

Functioni

GO - Molecular functioni

  1. deoxyribodipyrimidine photo-lyase activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA repair Source: InterPro
  2. protein-chromophore linkage Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LyaseImported

Keywords - Ligandi

ChromophoreUniRule annotation, FADUniRule annotation, Flavoprotein

Names & Taxonomyi

Protein namesi
Submitted name:
Deoxyribodipyrimidine photo-lyaseImported (EC:4.1.99.3Imported)
Gene namesi
Ordered Locus Names:Thicy_0182Imported
OrganismiThioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1)Imported
Taxonomic identifieri717773 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaThiotrichalesPiscirickettsiaceaeThioalkalimicrobium
ProteomesiUP000009232: Chromosome

Family & Domainsi

Sequence similaritiesi

Belongs to the DNA photolyase class-1 family.UniRule annotation

Phylogenomic databases

KOiK01669.
OMAiAINQATH.

Family and domain databases

Gene3Di3.40.50.620. 1 hit.
InterProiIPR002081. Cryptochrome/DNA_photolyase_1.
IPR018394. DNA_photolyase_1_CS_C.
IPR006050. DNA_photolyase_N.
IPR005101. Photolyase_FAD-bd/Cryptochr_C.
IPR014729. Rossmann-like_a/b/a_fold.
[Graphical view]
PfamiPF00875. DNA_photolyase. 1 hit.
PF03441. FAD_binding_7. 1 hit.
[Graphical view]
PRINTSiPR00147. DNAPHOTLYASE.
SUPFAMiSSF48173. SSF48173. 1 hit.
SSF52425. SSF52425. 1 hit.
PROSITEiPS00394. DNA_PHOTOLYASES_1_1. 1 hit.
PS51645. PHR_CRY_ALPHA_BETA. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F6D9K1-1 [UniParc]FASTAAdd to Basket

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MNQLIWFQRD LRLNDHTPIH RALSQNEPTL FAYFHDPQQA QGEANQVWLA    50
ASLSKLQTAL QAKNADLLVA EGEFSQAFER VLTTYNVKNV LYHFELGEPY 100
QTIQQQALAV CQRLKVRLTP FDQAWLPPES VLTQQGNPYG VYTPFSKKVF 150
SMLDGVPKPE GEANWSNFQP VTLENHDRQL PSRLKAIANT DWAKPLISQW 200
KVGEQAAINQ ATHFLTTHIQ HYPERRDFPA INGTSQLSIH LHFGEISSTR 250
LLESCRQAQA NQPGHSEAIQ SFIRQLIWRE FSRYLLFFNP GLINQAYQSK 300
FNQIDWPEPD DQVVAWQRGL TGVPIIDAGM RQLWHTGWMH NRVRMLVGSW 350
LTKNLNQHWL VGQAWFENTL LDADIANNVM GWQWVAGCGV DAAPYFRLFN 400
PVVQSEKFDP QGHYIRQWLP ELAPLPNQLI HAPWDAAGKI KQQFPTLAAN 450
YPLHDPNLKQ VRLDHQQRVQ ALKMMTNA 478
Length:478
Mass (Da):54,998
Last modified:July 27, 2011 - v1
Checksum:iD716FF62567AB714
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002776 Genomic DNA. Translation: AEG30958.1.
RefSeqiWP_013834741.1. NC_015581.1.
YP_004536437.1. NC_015581.1.

Genome annotation databases

EnsemblBacteriaiAEG30958; AEG30958; Thicy_0182.
GeneIDi10718976.
KEGGitcy:Thicy_0182.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002776 Genomic DNA. Translation: AEG30958.1 .
RefSeqi WP_013834741.1. NC_015581.1.
YP_004536437.1. NC_015581.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AEG30958 ; AEG30958 ; Thicy_0182 .
GeneIDi 10718976.
KEGGi tcy:Thicy_0182.

Phylogenomic databases

KOi K01669.
OMAi AINQATH.

Family and domain databases

Gene3Di 3.40.50.620. 1 hit.
InterProi IPR002081. Cryptochrome/DNA_photolyase_1.
IPR018394. DNA_photolyase_1_CS_C.
IPR006050. DNA_photolyase_N.
IPR005101. Photolyase_FAD-bd/Cryptochr_C.
IPR014729. Rossmann-like_a/b/a_fold.
[Graphical view ]
Pfami PF00875. DNA_photolyase. 1 hit.
PF03441. FAD_binding_7. 1 hit.
[Graphical view ]
PRINTSi PR00147. DNAPHOTLYASE.
SUPFAMi SSF48173. SSF48173. 1 hit.
SSF52425. SSF52425. 1 hit.
PROSITEi PS00394. DNA_PHOTOLYASES_1_1. 1 hit.
PS51645. PHR_CRY_ALPHA_BETA. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of Thioalkalimicrobium cyclicum ALM1."
    US DOE Joint Genome Institute
    Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Mikhailova N., Davenport K., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Kappler U., Woyke T.
    Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 14477 / JCM 11371 / ALM1.

Entry informationi

Entry nameiF6D9K1_THICA
AccessioniPrimary (citable) accession number: F6D9K1
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: September 3, 2014
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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