F6D9K1 (F6D9K1_THICA) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Deoxyribodipyrimidine photo-lyase EMBL AEG30958.1
EC=4.1.99.3 EMBL AEG30958.1

Gene names

Ordered Locus Names:

Thicy_0182 EMBL AEG30958.1

Organism

Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1) [Complete proteome] [HAMAP]

Taxonomic identifier

717773 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Thiotrichales › Piscirickettsiaceae › Thioalkalimicrobium › Thioalkalimicrobium cyclicum

Protein attributes

Sequence length	478 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the DNA photolyase class-1 family. RuleBase RU004182

Ontologies

Keywords
Ligand	Chromophore RuleBase RU004291 FAD RuleBase RU004291 Flavoprotein RuleBase RU004291
Molecular function	Lyase EMBL AEG30958.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA repair Inferred from electronic annotation. Source: InterPro protein-chromophore linkage Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	deoxyribodipyrimidine photo-lyase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F6D9K1 [UniParc]. Last modified July 27, 2011. Version 1. Checksum: D716FF62567AB714	FASTA	478	54,998
	10 20 30 40 50 60 MNQLIWFQRD LRLNDHTPIH RALSQNEPTL FAYFHDPQQA QGEANQVWLA ASLSKLQTAL 70 80 90 100 110 120 QAKNADLLVA EGEFSQAFER VLTTYNVKNV LYHFELGEPY QTIQQQALAV CQRLKVRLTP 130 140 150 160 170 180 FDQAWLPPES VLTQQGNPYG VYTPFSKKVF SMLDGVPKPE GEANWSNFQP VTLENHDRQL 190 200 210 220 230 240 PSRLKAIANT DWAKPLISQW KVGEQAAINQ ATHFLTTHIQ HYPERRDFPA INGTSQLSIH 250 260 270 280 290 300 LHFGEISSTR LLESCRQAQA NQPGHSEAIQ SFIRQLIWRE FSRYLLFFNP GLINQAYQSK 310 320 330 340 350 360 FNQIDWPEPD DQVVAWQRGL TGVPIIDAGM RQLWHTGWMH NRVRMLVGSW LTKNLNQHWL 370 380 390 400 410 420 VGQAWFENTL LDADIANNVM GWQWVAGCGV DAAPYFRLFN PVVQSEKFDP QGHYIRQWLP 430 440 450 460 470 ELAPLPNQLI HAPWDAAGKI KQQFPTLAAN YPLHDPNLKQ VRLDHQQRVQ ALKMMTNA

References

[1]

"Complete sequence of Thioalkalimicrobium cyclicum ALM1." US DOE Joint Genome Institute Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Mikhailova N., Davenport K., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Kappler U., Woyke T. Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 14477 / JCM 11371 / ALM1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002776 Genomic DNA. Translation: AEG30958.1.
RefSeq	YP_004536437.1. NC_015581.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEG30958; AEG30958; Thicy_0182.
GeneID	10718976.
KEGG	tcy:Thicy_0182.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01669.
Family and domain databases
Gene3D	3.40.50.620. 1 hit.
InterPro	IPR002081. Cryptochrome/DNA_photolyase_1. IPR018394. DNA_photolyase_1_CS_C. IPR006050. DNA_photolyase_N. IPR005101. Photolyase_FAD-bd/Cryptochr_C. IPR014729. Rossmann-like_a/b/a_fold. [Graphical view]
Pfam	PF00875. DNA_photolyase. 1 hit. PF03441. FAD_binding_7. 1 hit. [Graphical view]
PRINTS	PR00147. DNAPHOTLYASE.
SUPFAM	SSF52425. DNA_photolyase_N. 1 hit. SSF48173. Photolyase_FAD-bd/Cryptochr_C. 1 hit.
PROSITE	PS00394. DNA_PHOTOLYASES_1_1. 1 hit. PS51645. PHR_CRY_ALPHA_BETA. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

F6D9K1_THICA

Accession

Primary (citable) accession number: F6D9K1

Entry history

Integrated into UniProtKB/TrEMBL:	July 27, 2011
Last sequence update:	July 27, 2011
Last modified:	May 1, 2013
This is version 11 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)