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F6D953 (F6D953_THICA) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 20. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length396 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis By similarity. RuleBase RU000325 HAMAP-Rule MF_00118

Subunit structure

Monomer By similarity. HAMAP-Rule MF_00118

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00118.

Sequence similarities

Belongs to the GTP-binding elongation factor family. EF-Tu/EF-1A subfamily. RuleBase RU000325 HAMAP-Rule MF_00118

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding19 – 268GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding81 – 855GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding136 – 1394GTP By similarity HAMAP-Rule MF_00118

Sequences

Sequence LengthMass (Da)Tools
F6D953 [UniParc].

Last modified July 27, 2011. Version 1.
Checksum: 02662AF7317CDB14

FASTA39643,183
        10         20         30         40         50         60 
MAKAKFERTK PHVNVGTIGH VDHGKTTLTA ALTIVQGKKF GGDVKGYDQI DNAPEEKARG 

        70         80         90        100        110        120 
ITISTAHVEY ESESRHYAHV DCPGHADYVK NMITGAAQMD GAILVCSAAD GPMPQTREHI 

       130        140        150        160        170        180 
LLSRQVGVPY IVVFLNKADM VDDEELLELV EMEVRELLSD YDFPGDDTPV IKGSALKAIE 

       190        200        210        220        230        240 
GDQSEIGEPA IGRLIEALDT YIPTPERDTD KPFLMPVEDV FSIQGRGTVV TGRIETGVVK 

       250        260        270        280        290        300 
VGETVEIVGI RDTVSTTVTG VEMFRKLLDQ GEAGDNVGVL LRGTKREDVE RGQVLSHVGK 

       310        320        330        340        350        360 
INPHTQFESE VYVLSKEEGG RHTPFFNGYR PQFYFRTTDV TGACELPSGV EMVMPGDNIQ 

       370        380        390 
MTITLINPIA MDEGLRFAIR EGGRTVGAGV VSKILK 

« Hide

References

[1]"Complete sequence of Thioalkalimicrobium cyclicum ALM1."
US DOE Joint Genome Institute
Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Mikhailova N., Davenport K., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Kappler U., Woyke T.
Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ALM1 EMBL AEG30884.1 and DSM 14477 / JCM 11371 / ALM1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002776 Genomic DNA. Translation: AEG30884.1.
CP002776 Genomic DNA. Translation: AEG30896.1.
RefSeqYP_004536363.1. NC_015581.1.
YP_004536375.1. NC_015581.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEG30884; AEG30884; Thicy_0108.
AEG30896; AEG30896; Thicy_0120.
GeneID10718901.
10718914.
KEGGtcy:Thicy_0108.
tcy:Thicy_0120.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK02358.
OMAGTEMCMP.

Family and domain databases

Gene3D3.40.50.300. 1 hit.
HAMAPMF_00118_B. EF_Tu_B.
InterProIPR000795. EF_GTP-bd_dom.
IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR009000. Transl_B-barrel.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
IPR004541. Transl_elong_EFTu/EF1A_bac/org.
IPR004160. Transl_elong_EFTu/EF1A_C.
[Graphical view]
PfamPF00009. GTP_EFTU. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
PF03143. GTP_EFTU_D3. 1 hit.
[Graphical view]
PRINTSPR00315. ELONGATNFCT.
SUPFAMSSF50447. SSF50447. 1 hit.
SSF50465. SSF50465. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsTIGR00485. EF-Tu. 1 hit.
TIGR00231. small_GTP. 1 hit.
PROSITEPS00301. EFACTOR_GTP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF6D953_THICA
AccessionPrimary (citable) accession number: F6D953
Entry history
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: June 11, 2014
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)