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F6D5P5 (F6D5P5_METSW) Unreviewed, UniProtKB/TrEMBL

Last modified October 16, 2013. Version 12. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:MSWAN_1210 EMBL AEG18227.1
OrganismMethanobacterium sp. (strain SWAN-1) [Complete proteome] [HAMAP] EMBL AEG18227.1
Taxonomic identifier868131 [NCBI]
Taxonomic lineageArchaeaEuryarchaeotaMethanobacteriaMethanobacterialesMethanobacteriaceaeMethanobacterium

Protein attributes

Sequence length295 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Sequences

Sequence LengthMass (Da)Tools
F6D5P5 [UniParc].

Last modified July 27, 2011. Version 1.
Checksum: A33C3FF9848D1C99

FASTA29534,023
        10         20         30         40         50         60 
MIEPMLCKLT GPEVQLTGTW ISEPKYDGER IIASRKGDKI SLWTRRHIQV SKKFPEITQA 

        70         80         90        100        110        120 
LTKNMNDDNW IVDGEITVHG GFRDLLKRNV ENKFKIHILS KKIPATYNIF DIIQWKGEDL 

       130        140        150        160        170        180 
ISKPLIERKK VLIDAVYMDD RMRIVPFLKV DNQTVRKHFL EYLKDGFEGA VIKNAFSKYE 

       190        200        210        220        230        240 
PGKRSGQWIK IKREDTVDVY VVGATKSTGS IPFGALILKK DGRYFGKVGT GFTDQQRKDI 

       250        260        270        280        290 
LKILEKNRGP RGIMLPPEIE SEVLLTSKPL LAEIKIQEII KGSPRSPVWV RFRWE 

« Hide

References

[1]"Complete sequence of Methanobacterium sp. SWAN-1."
Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Ovchinnikova G., Chertkov O., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Cadillo-Quiroz H., Imachi H. expand/collapse author list , Zinder S., Liu W., Woyke T.
Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: SWAN-1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002772 Genomic DNA. Translation: AEG18227.1.
RefSeqYP_004520028.1. NC_015574.1.

3D structure databases

ProteinModelPortalF6D5P5.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEG18227; AEG18227; MSWAN_1210.
GeneID10668715.
KEGGmew:MSWAN_1210.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.
OMAATYNIFD.

Enzyme and pathway databases

BioCycMSP868131:GHW8-1239-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF6D5P5_METSW
AccessionPrimary (citable) accession number: F6D5P5
Entry history
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: October 16, 2013
This is version 12 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)