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Protein
Submitted name:

ATP dependent DNA ligase

Gene

MSWAN_1210

Organism
Methanobacterium paludis (strain DSM 25820 / JCM 18151 / SWAN1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciMSP868131:GHW8-1239-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:MSWAN_1210Imported
OrganismiMethanobacterium paludis (strain DSM 25820 / JCM 18151 / SWAN1)Imported
Taxonomic identifieri868131 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanobacteriaMethanobacterialesMethanobacteriaceaeMethanobacterium
ProteomesiUP000009231 Componenti: Chromosome

Structurei

3D structure databases

ProteinModelPortaliF6D5P5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK10747.
OMAiATYNIFD.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F6D5P5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIEPMLCKLT GPEVQLTGTW ISEPKYDGER IIASRKGDKI SLWTRRHIQV
60 70 80 90 100
SKKFPEITQA LTKNMNDDNW IVDGEITVHG GFRDLLKRNV ENKFKIHILS
110 120 130 140 150
KKIPATYNIF DIIQWKGEDL ISKPLIERKK VLIDAVYMDD RMRIVPFLKV
160 170 180 190 200
DNQTVRKHFL EYLKDGFEGA VIKNAFSKYE PGKRSGQWIK IKREDTVDVY
210 220 230 240 250
VVGATKSTGS IPFGALILKK DGRYFGKVGT GFTDQQRKDI LKILEKNRGP
260 270 280 290
RGIMLPPEIE SEVLLTSKPL LAEIKIQEII KGSPRSPVWV RFRWE
Length:295
Mass (Da):34,023
Last modified:July 27, 2011 - v1
Checksum:iA33C3FF9848D1C99
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002772 Genomic DNA. Translation: AEG18227.1.
RefSeqiWP_013825728.1. NC_015574.1.
YP_004520028.1. NC_015574.1.

Genome annotation databases

EnsemblBacteriaiAEG18227; AEG18227; MSWAN_1210.
GeneIDi10668715.
KEGGimew:MSWAN_1210.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002772 Genomic DNA. Translation: AEG18227.1.
RefSeqiWP_013825728.1. NC_015574.1.
YP_004520028.1. NC_015574.1.

3D structure databases

ProteinModelPortaliF6D5P5.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEG18227; AEG18227; MSWAN_1210.
GeneIDi10668715.
KEGGimew:MSWAN_1210.

Phylogenomic databases

KOiK10747.
OMAiATYNIFD.

Enzyme and pathway databases

BioCyciMSP868131:GHW8-1239-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Methanobacterium sp. SWAN-1."
    Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Ovchinnikova G., Chertkov O., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Cadillo-Quiroz H., Imachi H.
    , Zinder S., Liu W., Woyke T.
    Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 25820 / JCM 18151 / SWAN1Imported.

Entry informationi

Entry nameiF6D5P5_METPW
AccessioniPrimary (citable) accession number: F6D5P5
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: March 4, 2015
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.