F6D5P5 (F6D5P5_METSW) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP dependent DNA ligase EMBL AEG18227.1

Gene names

Ordered Locus Names:

MSWAN_1210

Organism

Methanobacterium sp. (strain SWAN-1) [Complete proteome] [HAMAP] EMBL AEG18227.1

Taxonomic identifier

868131 [NCBI]

Taxonomic lineage

cellular organisms › Archaea › Euryarchaeota › Methanobacteria › Methanobacteriales › Methanobacteriaceae › Methanobacterium

Protein attributes

Sequence length	295 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL AEG18227.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F6D5P5 [UniParc]. Last modified July 27, 2011. Version 1. Checksum: A33C3FF9848D1C99	FASTA	295	34,023
	10 20 30 40 50 60 MIEPMLCKLT GPEVQLTGTW ISEPKYDGER IIASRKGDKI SLWTRRHIQV SKKFPEITQA 70 80 90 100 110 120 LTKNMNDDNW IVDGEITVHG GFRDLLKRNV ENKFKIHILS KKIPATYNIF DIIQWKGEDL 130 140 150 160 170 180 ISKPLIERKK VLIDAVYMDD RMRIVPFLKV DNQTVRKHFL EYLKDGFEGA VIKNAFSKYE 190 200 210 220 230 240 PGKRSGQWIK IKREDTVDVY VVGATKSTGS IPFGALILKK DGRYFGKVGT GFTDQQRKDI 250 260 270 280 290 LKILEKNRGP RGIMLPPEIE SEVLLTSKPL LAEIKIQEII KGSPRSPVWV RFRWE

References

[1]

"Complete sequence of Methanobacterium sp. SWAN-1." Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Ovchinnikova G., Chertkov O., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Cadillo-Quiroz H., Imachi H. , Zinder S., Liu W., Woyke T. Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: SWAN-1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002772 Genomic DNA. Translation: AEG18227.1.
RefSeq	YP_004520028.1. NC_015574.1.
3D structure databases
ProteinModelPortal	F6D5P5.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEG18227; AEG18227; MSWAN_1210.
GeneID	10668715.
KEGG	mew:MSWAN_1210.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01971.
Enzyme and pathway databases
BioCyc	MSP868131:GHW8-1240-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS00333. DNA_LIGASE_A2. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

F6D5P5_METSW

Accession

Primary (citable) accession number: F6D5P5

Entry history

Integrated into UniProtKB/TrEMBL:	July 27, 2011
Last sequence update:	July 27, 2011
Last modified:	April 3, 2013
This is version 10 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)