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F6CIP6

- F6CIP6_DESK7

UniProt

F6CIP6 - F6CIP6_DESK7

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Protein
Submitted name:

DNA polymerase LigD, ligase domain protein

Gene
Desku_0983
Organism
Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciDKUZ760568:GHV4-1007-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, ligase domain proteinImported
Gene namesi
Ordered Locus Names:Desku_0983Imported
OrganismiDesulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17)Imported
Taxonomic identifieri760568 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesPeptococcaceaeDesulfotomaculum
ProteomesiUP000009229: Chromosome

Structurei

3D structure databases

ProteinModelPortaliF6CIP6.

Family & Domainsi

Phylogenomic databases

KOiK01971.
OMAiGVRIITR.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F6CIP6-1 [UniParc]FASTAAdd to Basket

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MEGQVSLPLL KPMLATSSRP FDSPDFLYEV KWDGYRVLAY LDGDTLLRSR    50
NLRDITATFP ELDELHKCVK NQPAIVDGEI VIFQDGRPSF AALQARGRLE 100
DPLKIKSMVR RYPAILMAFD VLYAGGRSLL NEPLRRRKEI LTEMINPGDQ 150
VLVSEFVLHQ GRAFADACAA WGLEGAMAKH LDSPYLPGQR SPYWRKFRHT 200
KEADLVICGY QEGLGRRRLG ALVLGGYRSG ELVYQGKVGT GFSREEEERL 250
LELLSRLVIP RPVLALPPVE ARRTIAVEPV LVCAVEYLSL TAGGLLRHCS 300
YRGLRPDKSP RECHFLLK 318
Length:318
Mass (Da):35,831
Last modified:July 27, 2011 - v1
Checksum:iD65E25930E6CB4BD
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002770 Genomic DNA. Translation: AEG14578.1.
RefSeqiWP_013822093.1. NC_015573.1.
YP_004516379.1. NC_015573.1.

Genome annotation databases

EnsemblBacteriaiAEG14578; AEG14578; Desku_0983.
GeneIDi10664856.
KEGGidku:Desku_0983.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002770 Genomic DNA. Translation: AEG14578.1 .
RefSeqi WP_013822093.1. NC_015573.1.
YP_004516379.1. NC_015573.1.

3D structure databases

ProteinModelPortali F6CIP6.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AEG14578 ; AEG14578 ; Desku_0983 .
GeneIDi 10664856.
KEGGi dku:Desku_0983.

Phylogenomic databases

KOi K01971.
OMAi GVRIITR.

Enzyme and pathway databases

BioCyci DKUZ760568:GHV4-1007-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of Desulfotomaculum kuznetsovii DSM 6115."
    Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Mikhailova N., Lu M., Saunders E., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Nazina T.
    , Ivanova A., Parshina S., Kuever J., Muyzer G., Plugge C., Stams A., Woyke T.
    Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 6115 / VKM B-1805 / 17.

Entry informationi

Entry nameiF6CIP6_DESK7
AccessioniPrimary (citable) accession number: F6CIP6
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: September 3, 2014
This is version 15 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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