Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

F6CIP6

- F6CIP6_DESK7

UniProt

F6CIP6 - F6CIP6_DESK7

Protein
Submitted name:

DNA polymerase LigD, ligase domain protein

Gene

Desku_0983

Organism
Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 16 (01 Oct 2014)
      Sequence version 1 (27 Jul 2011)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciDKUZ760568:GHV4-1007-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA polymerase LigD, ligase domain proteinImported
    Gene namesi
    Ordered Locus Names:Desku_0983Imported
    OrganismiDesulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17)Imported
    Taxonomic identifieri760568 [NCBI]
    Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesPeptococcaceaeDesulfotomaculum
    ProteomesiUP000009229: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliF6CIP6.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.
    OMAiGVRIITR.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F6CIP6-1 [UniParc]FASTAAdd to Basket

    « Hide

    MEGQVSLPLL KPMLATSSRP FDSPDFLYEV KWDGYRVLAY LDGDTLLRSR    50
    NLRDITATFP ELDELHKCVK NQPAIVDGEI VIFQDGRPSF AALQARGRLE 100
    DPLKIKSMVR RYPAILMAFD VLYAGGRSLL NEPLRRRKEI LTEMINPGDQ 150
    VLVSEFVLHQ GRAFADACAA WGLEGAMAKH LDSPYLPGQR SPYWRKFRHT 200
    KEADLVICGY QEGLGRRRLG ALVLGGYRSG ELVYQGKVGT GFSREEEERL 250
    LELLSRLVIP RPVLALPPVE ARRTIAVEPV LVCAVEYLSL TAGGLLRHCS 300
    YRGLRPDKSP RECHFLLK 318
    Length:318
    Mass (Da):35,831
    Last modified:July 27, 2011 - v1
    Checksum:iD65E25930E6CB4BD
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002770 Genomic DNA. Translation: AEG14578.1.
    RefSeqiWP_013822093.1. NC_015573.1.
    YP_004516379.1. NC_015573.1.

    Genome annotation databases

    EnsemblBacteriaiAEG14578; AEG14578; Desku_0983.
    GeneIDi10664856.
    KEGGidku:Desku_0983.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002770 Genomic DNA. Translation: AEG14578.1 .
    RefSeqi WP_013822093.1. NC_015573.1.
    YP_004516379.1. NC_015573.1.

    3D structure databases

    ProteinModelPortali F6CIP6.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEG14578 ; AEG14578 ; Desku_0983 .
    GeneIDi 10664856.
    KEGGi dku:Desku_0983.

    Phylogenomic databases

    KOi K01971.
    OMAi GVRIITR.

    Enzyme and pathway databases

    BioCyci DKUZ760568:GHV4-1007-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of Desulfotomaculum kuznetsovii DSM 6115."
      Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Mikhailova N., Lu M., Saunders E., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Nazina T.
      , Ivanova A., Parshina S., Kuever J., Muyzer G., Plugge C., Stams A., Woyke T.
      Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DSM 6115 / VKM B-1805 / 17Imported.

    Entry informationi

    Entry nameiF6CIP6_DESK7
    AccessioniPrimary (citable) accession number: F6CIP6
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 27, 2011
    Last sequence update: July 27, 2011
    Last modified: October 1, 2014
    This is version 16 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3