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Protein
Submitted name:

DNA polymerase LigD, ligase domain protein

Gene

Desku_0983

Organism
Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciDKUZ760568:GHV4-1007-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, ligase domain proteinImported
Gene namesi
Ordered Locus Names:Desku_0983Imported
OrganismiDesulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17)Imported
Taxonomic identifieri760568 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesPeptococcaceaeDesulfotomaculum
ProteomesiUP000009229 Componenti: Chromosome

Structurei

3D structure databases

ProteinModelPortaliF6CIP6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

OMAiMHVRDPR.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F6CIP6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEGQVSLPLL KPMLATSSRP FDSPDFLYEV KWDGYRVLAY LDGDTLLRSR
60 70 80 90 100
NLRDITATFP ELDELHKCVK NQPAIVDGEI VIFQDGRPSF AALQARGRLE
110 120 130 140 150
DPLKIKSMVR RYPAILMAFD VLYAGGRSLL NEPLRRRKEI LTEMINPGDQ
160 170 180 190 200
VLVSEFVLHQ GRAFADACAA WGLEGAMAKH LDSPYLPGQR SPYWRKFRHT
210 220 230 240 250
KEADLVICGY QEGLGRRRLG ALVLGGYRSG ELVYQGKVGT GFSREEEERL
260 270 280 290 300
LELLSRLVIP RPVLALPPVE ARRTIAVEPV LVCAVEYLSL TAGGLLRHCS
310
YRGLRPDKSP RECHFLLK
Length:318
Mass (Da):35,831
Last modified:July 26, 2011 - v1
Checksum:iD65E25930E6CB4BD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002770 Genomic DNA. Translation: AEG14578.1.
RefSeqiYP_004516379.1. NC_015573.1.

Genome annotation databases

EnsemblBacteriaiAEG14578; AEG14578; Desku_0983.
KEGGidku:Desku_0983.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002770 Genomic DNA. Translation: AEG14578.1.
RefSeqiYP_004516379.1. NC_015573.1.

3D structure databases

ProteinModelPortaliF6CIP6.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEG14578; AEG14578; Desku_0983.
KEGGidku:Desku_0983.

Phylogenomic databases

OMAiMHVRDPR.

Enzyme and pathway databases

BioCyciDKUZ760568:GHV4-1007-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Desulfotomaculum kuznetsovii DSM 6115."
    Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Mikhailova N., Lu M., Saunders E., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Nazina T.
    , Ivanova A., Parshina S., Kuever J., Muyzer G., Plugge C., Stams A., Woyke T.
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 6115 / VKM B-1805 / 17Imported.

Entry informationi

Entry nameiF6CIP6_DESK7
AccessioniPrimary (citable) accession number: F6CIP6
Entry historyi
Integrated into UniProtKB/TrEMBL: July 26, 2011
Last sequence update: July 26, 2011
Last modified: March 31, 2015
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.