Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

F6CIP6

- F6CIP6_DESK7

UniProt

F6CIP6 - F6CIP6_DESK7

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
Submitted name:

DNA polymerase LigD, ligase domain protein

Gene

Desku_0983

Organism
Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciDKUZ760568:GHV4-1007-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, ligase domain proteinImported
Gene namesi
Ordered Locus Names:Desku_0983Imported
OrganismiDesulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17)Imported
Taxonomic identifieri760568 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesPeptococcaceaeDesulfotomaculum
ProteomesiUP000009229: Chromosome

Structurei

3D structure databases

ProteinModelPortaliF6CIP6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK01971.
OMAiGVRIITR.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F6CIP6-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MEGQVSLPLL KPMLATSSRP FDSPDFLYEV KWDGYRVLAY LDGDTLLRSR
60 70 80 90 100
NLRDITATFP ELDELHKCVK NQPAIVDGEI VIFQDGRPSF AALQARGRLE
110 120 130 140 150
DPLKIKSMVR RYPAILMAFD VLYAGGRSLL NEPLRRRKEI LTEMINPGDQ
160 170 180 190 200
VLVSEFVLHQ GRAFADACAA WGLEGAMAKH LDSPYLPGQR SPYWRKFRHT
210 220 230 240 250
KEADLVICGY QEGLGRRRLG ALVLGGYRSG ELVYQGKVGT GFSREEEERL
260 270 280 290 300
LELLSRLVIP RPVLALPPVE ARRTIAVEPV LVCAVEYLSL TAGGLLRHCS
310
YRGLRPDKSP RECHFLLK
Length:318
Mass (Da):35,831
Last modified:July 27, 2011 - v1
Checksum:iD65E25930E6CB4BD
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002770 Genomic DNA. Translation: AEG14578.1.
RefSeqiYP_004516379.1. NC_015573.1.

Genome annotation databases

EnsemblBacteriaiAEG14578; AEG14578; Desku_0983.
GeneIDi10664856.
KEGGidku:Desku_0983.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002770 Genomic DNA. Translation: AEG14578.1 .
RefSeqi YP_004516379.1. NC_015573.1.

3D structure databases

ProteinModelPortali F6CIP6.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AEG14578 ; AEG14578 ; Desku_0983 .
GeneIDi 10664856.
KEGGi dku:Desku_0983.

Phylogenomic databases

KOi K01971.
OMAi GVRIITR.

Enzyme and pathway databases

BioCyci DKUZ760568:GHV4-1007-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of Desulfotomaculum kuznetsovii DSM 6115."
    Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Mikhailova N., Lu M., Saunders E., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Nazina T.
    , Ivanova A., Parshina S., Kuever J., Muyzer G., Plugge C., Stams A., Woyke T.
    Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 6115 / VKM B-1805 / 17Imported.

Entry informationi

Entry nameiF6CIP6_DESK7
AccessioniPrimary (citable) accession number: F6CIP6
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: October 29, 2014
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3