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F6C9H4 (F6C9H4_BIFBA) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 16. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=2.6.1.- EMBL AEF26318.1
Gene names
Ordered Locus Names:HMPREF9228_0863 EMBL AEF26318.1
OrganismBifidobacterium breve (strain ACS-071-V-Sch8b) [Complete proteome] [HAMAP] EMBL AEF26318.1
Taxonomic identifier866777 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeBifidobacterialesBifidobacteriaceaeBifidobacterium

Protein attributes

Sequence length511 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
F6C9H4 [UniParc].

Last modified July 27, 2011. Version 1.
Checksum: A6389ADF8061D902

FASTA51157,072
        10         20         30         40         50         60 
MSVSAFAERL RNAMNSRELK QVDLVHAAER RGVKMGKSHI SQYVAGKTMP REDVLLFLAD 

        70         80         90        100        110        120 
ELDVDANWLR GRSSETKLNS DAQPASHIDT PSGAPTSAET EIPAARRRTF GKSHKLDDVL 

       130        140        150        160        170        180 
YDVRGPVVDE AARMEQAGTH VLKLNIGNPA PFGFRTPDEV VYDMAQQLPE TEGYSASKGL 

       190        200        210        220        230        240 
FSARKAIMQY AQLKNIPNVT IEDIYTGNGV SELINLSMSA LLDSGDEVLV PSPDYPLWTA 

       250        260        270        280        290        300 
CVNLAGGTAV HYLCDEKSDW YPDIDDMRKK ITDRTVAIVL INPNNPTGAL YPKEVLQQIV 

       310        320        330        340        350        360 
DLAREHQLMI FSDEIYDRLV MDGLEHISIA SMAPDLFCVT FSGLSKSHMI AGYRVGWMIL 

       370        380        390        400        410        420 
SGNKAIAKDY IEGINMLTNM RICSNVPAQS IVQTALGGHQ SVHDYIVPGG RIHDQRDYIY 

       430        440        450        460        470        480 
DALNSIPGIT AVKPKAAFYI FPKIDIKKFN VHDDEQFALD LLHDKRILIT RGGGFNWHEP 

       490        500        510 
DHFRIVYLPR IEVLKDATNK LSDFLSYYWQ S 

« Hide

References

[1]"Complete sequence of Bifidobacterium breves ACS-071-V-Sch8b."
Durkin A.S., Kim M., Radune D., Hostetler J., Torralba M., Gillis M., Methe B., Sutton G., Nelson K.E.
Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ACS-071-V-Sch8b.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002743 Genomic DNA. Translation: AEF26318.1.
RefSeqYP_005582716.1. NC_017218.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEF26318; AEF26318; HMPREF9228_0863.
GeneID12169518.
KEGGbbv:HMPREF9228_0863.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK14260.
OMAYQARDMR.
OrthoDBEOG6X9MJ6.

Enzyme and pathway databases

BioCycBBRE866777:GL99-859-MONOMER.

Family and domain databases

Gene3D1.10.260.40. 1 hit.
3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProIPR004839. Aminotransferase_I/II.
IPR001387. Cro/C1-type_HTH.
IPR010982. Lambda_DNA-bd_dom.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamPF00155. Aminotran_1_2. 1 hit.
PF01381. HTH_3. 1 hit.
[Graphical view]
SMARTSM00530. HTH_XRE. 1 hit.
[Graphical view]
SUPFAMSSF47413. SSF47413. 1 hit.
SSF53383. SSF53383. 1 hit.
PROSITEPS50943. HTH_CROC1. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF6C9H4_BIFBA
AccessionPrimary (citable) accession number: F6C9H4
Entry history
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: May 14, 2014
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)