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F6C6D7 (F6C6D7_BIFBA) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 10. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Exodeoxyribonuclease 7 large subunit HAMAP-Rule MF_00378
EC=3.1.11.6 HAMAP-Rule MF_00378
Alternative name(s):
Exodeoxyribonuclease VII large subunit HAMAP-Rule MF_00378
Gene names
Name:xseA HAMAP-Rule MF_00378 EMBL AEF26880.1
Ordered Locus Names:HMPREF9228_1493 EMBL AEF26880.1
OrganismBifidobacterium breve (strain ACS-071-V-Sch8b) [Complete proteome] [HAMAP]
Taxonomic identifier866777 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Bifidobacteriales › Bifidobacteriaceae › Bifidobacterium ›

Protein attributes

Sequence length451 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides By similarity. HAMAP-Rule MF_00378 SAAS SAAS025824

Catalytic activity

Exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield nucleoside 5'-phosphates. HAMAP-Rule MF_00378

Exonucleolytic cleavage in either 5'- to 3'-or 3'- to 5'-direction to yield nucleoside 5'-phosphates. SAAS SAAS025824

Subunit structure

Heterooligomer composed of large and small subunits By similarity. HAMAP-Rule MF_00378 SAAS SAAS025824

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00378 SAAS SAAS025824.

Sequence similarities

Belongs to the XseA family. HAMAP-Rule MF_00378

Sequences

Sequence LengthMass (Da)Tools
F6C6D7 [UniParc].

Last modified July 27, 2011. Version 1.
Checksum: AF5945E4AFCDC1F2

FASTA45148,837
        10         20         30         40         50         60 
MGYSNTGQSP TAASLASAGF GPNTATEAGQ GTVNLPDGPR PVDQLPRLAA ETTAQNPWPV 

        70         80         90        100        110        120 
SMLSQKFYGA VERWPSAWVT GQITQINTRR AGSAYITLRD DFEDIAMEVN GFGRFADTAR 

       130        140        150        160        170        180 
QFVQGDRVVI HGKPNLWMKR TSLSLRGDTI LKVGAGGSLK DMIDELRKRL KGEGLFDADH 

       190        200        210        220        230        240 
KLPLPEFPKT IGLICAPQAR AEGDVITNVN LRWPSVTFKV VHVHVQGEQC PGEVAQAIAR 

       250        260        270        280        290        300 
LDTDPDVDVI IVARGGGSFE DLMGFSDERV VRAAYACTTP LISSIGHEDD WTLLDLVADL 

       310        320        330        340        350        360 
RASTPTDAAK RVVPDVNEQT QLITGAIDRM RLRIRSRVDN EDRLIEGYAN RPSLTQPLTM 

       370        380        390        400        410        420 
LEPHQRLIDD SIQRLDIGLR RIVDDAQLTV EKAHASLTAL SPQSTLNRGY AVVQSADGTV 

       430        440        450 
LDDASTAHIG DDITVTLKKG VITATTTSAA A

« Hide

References

[1]"Complete sequence of Bifidobacterium breves ACS-071-V-Sch8b."
Durkin A.S., Kim M., Radune D., Hostetler J., Torralba M., Gillis M., Methe B., Sutton G., Nelson K.E.
Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ACS-071-V-Sch8b.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP002743 Genomic DNA. Translation: AEF26880.1.
RefSeqYP_005583286.1. NC_017218.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEF26880; AEF26880; HMPREF9228_1493.
GeneID12170146.
KEGGbbv:HMPREF9228_1493.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK03601.
OMAVVENICI.

Family and domain databases

HAMAPMF_00378. Exonuc_7_L.
InterProIPR003753. Exonuc_VII_L.
IPR020579. Exonuc_VII_lsu_C.
IPR025824. OB-fold_nuc-bd_dom.
[Graphical view]
PfamPF02601. Exonuc_VII_L. 2 hits.
PF13742. tRNA_anti_2. 1 hit.
[Graphical view]
TIGRFAMsTIGR00237. xseA. 1 hit.
ProtoNetSearch...

Entry information

Entry nameF6C6D7_BIFBA
AccessionPrimary (citable) accession number: F6C6D7
Entry history
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: April 3, 2013
This is version 10 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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