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F6C622 (F6C622_BIFBA) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 14. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:HMPREF9228_0117 EMBL AEF26705.1
OrganismBifidobacterium breve (strain ACS-071-V-Sch8b) [Complete proteome] [HAMAP] EMBL AEF26705.1
Taxonomic identifier866777 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeBifidobacterialesBifidobacteriaceaeBifidobacterium

Protein attributes

Sequence length628 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular_functioncatalytic activity

Inferred from electronic annotation. Source: InterPro

cation binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
F6C622 [UniParc].

Last modified July 27, 2011. Version 1.
Checksum: A8ACE09A5BFE9109

FASTA62869,812
        10         20         30         40         50         60 
MSGRVRHAEA SPRPSWLSSA RFYEVYPQSF ADSNGDGIGD LRGLTERLGY IHDLGCNALW 

        70         80         90        100        110        120 
INPCFDSPFK DAGYDVRDYT KVAPRYGTND DLTALFEHAH TLGMHVLLDL VPGHTSEEHP 

       130        140        150        160        170        180 
WFQASSRPDP TERVTPVDAD RTIPVESVTP VGQTTPRIAS LFDPRRRGSD CETIRRVVQE 

       190        200        210        220        230        240 
SDTQESVSDR YIWTDSWISR GDGLPFIGGE TERDGTYIIN FFKCQPALNY GFAHPKHPWQ 

       250        260        270        280        290        300 
KPALGPEALA TCEAMLDVMR FWLSRGADGF RVDMADSLVK HDDDGKPFTI RTWQYIFSRI 

       310        320        330        340        350        360 
RPEFPEAAFV AEWGRPYESM QAGFDMDFYL DWRWDGHPNG YNMLLRNTDT PLDHESDASY 

       370        380        390        400        410        420 
FNADSGTSIA PFLEQYLPQL HDCERASGTF NLITCNHDTL RVAQRLTERE LKVAYGMLLT 

       430        440        450        460        470        480 
MPGCPFLYYG DEIGMRYRPL PTKEGGYVRT GSRTPMQWDA DKPNLGFSCA PSESLYLPVD 

       490        500        510        520        530        540 
SAADAPTVAS EAAREDSLFN WVREVLALRT EQPALASDAR FDVVAAPVDG RAFAYIRTPA 

       550        560        570        580        590        600 
DGHASTHPRT TADSSSAPAP AATRDDVSDR NGATARPLLI AMNPGRGIET VELPSELRPD 

       610        620 
ASMLLALGSP TVSGRTLTLP AQSFAILG 

« Hide

References

[1]"Complete sequence of Bifidobacterium breves ACS-071-V-Sch8b."
Durkin A.S., Kim M., Radune D., Hostetler J., Torralba M., Gillis M., Methe B., Sutton G., Nelson K.E.
Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ACS-071-V-Sch8b.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002743 Genomic DNA. Translation: AEF26705.1.
RefSeqYP_005582047.1. NC_017218.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEF26705; AEF26705; HMPREF9228_0117.
GeneID12168776.
KEGGbbv:HMPREF9228_0117.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK05343.
OMACNALWIN.
OrthoDBEOG6BKJ6N.

Enzyme and pathway databases

BioCycBBRE866777:GL99-117-MONOMER.

Family and domain databases

Gene3D3.20.20.80. 3 hits.
InterProIPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF00128. Alpha-amylase. 2 hits.
[Graphical view]
SMARTSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMSSF51445. SSF51445. 2 hits.
ProtoNetSearch...

Entry information

Entry nameF6C622_BIFBA
AccessionPrimary (citable) accession number: F6C622
Entry history
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: November 13, 2013
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)