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Protein
Submitted name:

Alpha amylase, catalytic domain protein

Gene

HMPREF9228_0117

Organism
Bifidobacterium breve (strain ACS-071-V-Sch8b)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. catalytic activity Source: InterPro
  2. cation binding Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciBBRE866777:GL99-117-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha amylase, catalytic domain proteinImported
Gene namesi
Ordered Locus Names:HMPREF9228_0117Imported
OrganismiBifidobacterium breve (strain ACS-071-V-Sch8b)Imported
Taxonomic identifieri866777 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeBifidobacterialesBifidobacteriaceaeBifidobacterium
ProteomesiUP000008279 Componenti: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK05343.
OMAiYIINFFK.
OrthoDBiEOG6BKJ6N.

Family and domain databases

Gene3Di3.20.20.80. 3 hits.
InterProiIPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 2 hits.
[Graphical view]
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 2 hits.

Sequencei

Sequence statusi: Complete.

F6C622-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSGRVRHAEA SPRPSWLSSA RFYEVYPQSF ADSNGDGIGD LRGLTERLGY
60 70 80 90 100
IHDLGCNALW INPCFDSPFK DAGYDVRDYT KVAPRYGTND DLTALFEHAH
110 120 130 140 150
TLGMHVLLDL VPGHTSEEHP WFQASSRPDP TERVTPVDAD RTIPVESVTP
160 170 180 190 200
VGQTTPRIAS LFDPRRRGSD CETIRRVVQE SDTQESVSDR YIWTDSWISR
210 220 230 240 250
GDGLPFIGGE TERDGTYIIN FFKCQPALNY GFAHPKHPWQ KPALGPEALA
260 270 280 290 300
TCEAMLDVMR FWLSRGADGF RVDMADSLVK HDDDGKPFTI RTWQYIFSRI
310 320 330 340 350
RPEFPEAAFV AEWGRPYESM QAGFDMDFYL DWRWDGHPNG YNMLLRNTDT
360 370 380 390 400
PLDHESDASY FNADSGTSIA PFLEQYLPQL HDCERASGTF NLITCNHDTL
410 420 430 440 450
RVAQRLTERE LKVAYGMLLT MPGCPFLYYG DEIGMRYRPL PTKEGGYVRT
460 470 480 490 500
GSRTPMQWDA DKPNLGFSCA PSESLYLPVD SAADAPTVAS EAAREDSLFN
510 520 530 540 550
WVREVLALRT EQPALASDAR FDVVAAPVDG RAFAYIRTPA DGHASTHPRT
560 570 580 590 600
TADSSSAPAP AATRDDVSDR NGATARPLLI AMNPGRGIET VELPSELRPD
610 620
ASMLLALGSP TVSGRTLTLP AQSFAILG
Length:628
Mass (Da):69,812
Last modified:July 27, 2011 - v1
Checksum:iA8ACE09A5BFE9109
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002743 Genomic DNA. Translation: AEF26705.1.
RefSeqiYP_005582047.1. NC_017218.1.

Genome annotation databases

EnsemblBacteriaiAEF26705; AEF26705; HMPREF9228_0117.
KEGGibbv:HMPREF9228_0117.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002743 Genomic DNA. Translation: AEF26705.1.
RefSeqiYP_005582047.1. NC_017218.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEF26705; AEF26705; HMPREF9228_0117.
KEGGibbv:HMPREF9228_0117.

Phylogenomic databases

KOiK05343.
OMAiYIINFFK.
OrthoDBiEOG6BKJ6N.

Enzyme and pathway databases

BioCyciBBRE866777:GL99-117-MONOMER.

Family and domain databases

Gene3Di3.20.20.80. 3 hits.
InterProiIPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 2 hits.
[Graphical view]
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 2 hits.
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Bifidobacterium breves ACS-071-V-Sch8b."
    Durkin A.S., Kim M., Radune D., Hostetler J., Torralba M., Gillis M., Methe B., Sutton G., Nelson K.E.
    Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ACS-071-V-Sch8bImported.

Entry informationi

Entry nameiF6C622_BIFBA
AccessioniPrimary (citable) accession number: F6C622
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: April 1, 2015
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.