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F6C0V6 (F6C0V6_SINMB) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 14. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:SinmeB_4658 EMBL AEG08933.1
Encoded onPlasmid pSINMEB02 EMBL AEG08933.1
OrganismSinorhizobium meliloti (strain BL225C) [Complete proteome] [HAMAP] EMBL AEG08933.1
Taxonomic identifier698936 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium

Protein attributes

Sequence length355 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL AEG08933.1
   Technical termComplete proteome
Plasmid EMBL AEG08933.1
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
F6C0V6 [UniParc].

Last modified July 27, 2011. Version 1.
Checksum: 15E57A2F49A5266C

FASTA35539,136
        10         20         30         40         50         60 
MASSAHGKPT KKAAPSSAAK KAGGFPLPVS TAPMEARSAT ELPGGDAWQY EPKWDGFRCL 

        70         80         90        100        110        120 
AFKSGDEVDI RAKSGKPLGR FFPEIVALLR RLEPDMFVLD GELVIEVDGR LSFDALQMRL 

       130        140        150        160        170        180 
HPAASRVQKL SQETPAKLIL FDMLAGTDGT ILTGEPLQTR RACLEAFAKK NAVAGMLESS 

       190        200        210        220        230        240 
PFTLDIEEAE RWLTSWEAGA TDGVVAKRRD GVYECGERAM VKVKRLKTAD CVVGGFRYES 

       250        260        270        280        290        300 
DSSLVGSLLL GLYDTEGLLN HVGFTATISD KERPALTNQL EALREPPGFT GKAPGGPSRW 

       310        320        330        340        350 
SSERSGEWEP VRPELVVEVR FDHVSNRRFR HGTKLMRWRP DKDPRQCTYQ QIMPS 

« Hide

References

[1]"Exploring the symbiotic pangenome of the nitrogen-fixing bacterium Sinorhizobium meliloti."
US DOE Joint Genome Institute
Galardini M., Mengoni A., Brilli M., Pini F., Fioravanti A., Lucas S., Lapidus A., Cheng J.F., Goodwin L., Pitluck S., Land M., Hauser L., Woyke T., Mikhailova N., Ivanova N., Daligault H., Bruce D., Detter C. expand/collapse author list , Tapia R., Han C., Teshima H., Mocali S., Bazzicalupo M., Biondi E.G.
BMC Genomics 12:235-235(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: BL225C.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002742 Genomic DNA. Translation: AEG08933.1.
RefSeqYP_005716754.1. NC_017323.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEG08933; AEG08933; SinmeB_4658.
GeneID12306644.
KEGGsmq:SinmeB_4658.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF6C0V6_SINMB
AccessionPrimary (citable) accession number: F6C0V6
Entry history
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: April 16, 2014
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)