F6BTY7 (F6BTY7_SINMB) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA ligase D EMBL AEG05471.1

Gene names

Ordered Locus Names:

SinmeB_2574 EMBL AEG05471.1

Organism

Sinorhizobium meliloti (strain BL225C) [Complete proteome] [HAMAP] EMBL AEG05471.1

Taxonomic identifier

698936 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Sinorhizobium/Ensifer group › Sinorhizobium › Rhizobium meliloti

Protein attributes

Sequence length	865 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL AEG05471.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro DNA primase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F6BTY7 [UniParc]. Last modified July 27, 2011. Version 1. Checksum: A1F873AAB0EEAE40	FASTA	865	95,261
	10 20 30 40 50 60 MAARNEPLSE YNRRRDFTRT SEPKGAVARR SGDNRMRFLV QKHAATRLHY DFRLEWEGVL 70 80 90 100 110 120 KSWAVTRGPS LNPEDKRLAV RTEDHPLAYG DFEGTIPKGE YGGGTVMLWD TGWWEPEDDP 130 140 150 160 170 180 SKALKKGKLS FKLHGSRMKG GWALVRMRPR EGEKRENWLL VKETDDVASD DGESLINENI 190 200 210 220 230 240 TSIVTGRTME EIAEGRGEKR ARVWHSNKSI SANLKAGAIA ENGNAGKRAT RKASGKLPAF 250 260 270 280 290 300 KAPQLATLVT KVPAGDAWLN EAKFDGYRLV CAVGAGTVRC YTRNGLDWTE KFPAIAAALA 310 320 330 340 350 360 ELDCQSALID GEVVALSEGG STFSALQKAL RTGASTRLYA FDLIELDGKD LSRKPLVERK 370 380 390 400 410 420 ERLEALLQTL GATSTVQFSE HVRGNGEHVL SAICKAGQEG IIAKEADAPY RSGRSRSWLK 430 440 450 460 470 480 VKCTKRQEFV IGGYTPSSKK GRAFASLLVG TFEGGKLIYR GGVGTGFSGK TMEDLAAAFA 490 500 510 520 530 540 KRKRDTSPFD SVPRERMRNS VWLEPDLVAE VDFAEFTADG HVRHGSFEGL REDKEARAVK 550 560 570 580 590 600 LETPKPAEAE PETAKSKSSA RTRKTPPVQG DADVLGIRIS HPDRVLFEGQ GITKIDLARY 610 620 630 640 650 660 YAVVAERMLP FAADHPVSLV RCPQGGERHC FFQKHASDGF PEAIREVPIT ESSGDTENYM 670 680 690 700 710 720 YIHDAKGLVA AVQMGTLEFH IWGSSIDRLE KPDRLVFDLD PDPSVDFETV KAAALRLRDE 730 740 750 760 770 780 LAEIGLKTVP MVTGGKGVHV IVPLRPHAEW EEAKGFAKAL ARSIAERDPD NFVATMSKAK 790 800 810 820 830 840 RKGKIFIDWL RNDRGATAIA PYSTRARSGG PVATPVGWDE LQGLEAANGF QIPDIIERIE 850 860 AGTDPWREIG KISQSLTKKI LNSVE

References

[1]

"Exploring the symbiotic pangenome of the nitrogen-fixing bacterium Sinorhizobium meliloti." US DOE Joint Genome Institute Galardini M., Mengoni A., Brilli M., Pini F., Fioravanti A., Lucas S., Lapidus A., Cheng J.F., Goodwin L., Pitluck S., Land M., Hauser L., Woyke T., Mikhailova N., Ivanova N., Daligault H., Bruce D., Detter C. , Tapia R., Han C., Teshima H., Mocali S., Bazzicalupo M., Biondi E.G. BMC Genomics 12:235-235(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: BL225C.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002740 Genomic DNA. Translation: AEG05471.1.
RefSeq	YP_005714714.1. NC_017322.1.
3D structure databases
ProteinModelPortal	F6BTY7.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEG05471; AEG05471; SinmeB_2574.
GeneID	12302810.
KEGG	smq:SinmeB_2574.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01971.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR002755. DNA_primase_S. IPR014144. LigD_PE_domain. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. IPR014143. NHEJ_ligase_prk. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF01896. DNA_primase_S. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02777. LigD_PE_dom. 1 hit. TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit. TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

F6BTY7_SINMB

Accession

Primary (citable) accession number: F6BTY7

Entry history

Integrated into UniProtKB/TrEMBL:	July 27, 2011
Last sequence update:	July 27, 2011
Last modified:	April 3, 2013
This is version 14 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)