F6BNC3 (F6BNC3_SINMB) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP dependent DNA ligase EMBL AEG05634.1

Gene names

Ordered Locus Names:

SinmeB_2737 EMBL AEG05634.1

Organism

Sinorhizobium meliloti (strain BL225C) [Complete proteome] [HAMAP] EMBL AEG05634.1

Taxonomic identifier

698936 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Sinorhizobium/Ensifer group › Sinorhizobium › Rhizobium meliloti

Protein attributes

Sequence length	537 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL AEG05634.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F6BNC3 [UniParc]. Last modified July 27, 2011. Version 1. Checksum: BD706BE3A0E12AD5	FASTA	537	59,849
	10 20 30 40 50 60 MKAFAELLDR LVLTPQRNAK IRLLVDYFRG APDPSRGYAL AAIAGTLSLN TVKPALIRDL 70 80 90 100 110 120 LLERMDDVLF HYSYDYVGDL AETVSLAWEP PPDVALQDIP LGEVVERLQR AGRSEVRSLV 130 140 150 160 170 180 RDFLDRLDTS GRFALLKLAT GGLRIGVSAR LAKQALAEMG GKEVSEIETL WHGLEPPYLP 190 200 210 220 230 240 LFLWLTGEAE MPVLKTPAVF HSVMLATAVG DGDLDGLDPA DFAAEWKWDG IRVQLANVGG 250 260 270 280 290 300 ARRLYSRSGD EISSAFPEII EAADITGVID GELLVGGTMR SNRATGTFAD LQQRLNRKTV 310 320 330 340 350 360 SRKLMDEYPA FIRAYDILFS GERDIRPEPF RVRREALSSL IEAASPQHFD LSPLVGFSSW 370 380 390 400 410 420 KELDELRSSP PDPVIEGVML KRLDSPYMAG RAKGPWFKWK RAPFNIDAVL MYAQRGHGKR 430 440 450 460 470 480 SSYYSDFTFG VWAEGEDGAS LVPVGKAYFG FTDAELEVLD RFVRDNTVER FGPVRAVRAE 490 500 510 520 530 PDSGFVVEVA FEGLNRSTRH KSGVAMRFPR IARLRPDKLP RDADRLETLQ AMMGTQR

References

[1]

"Exploring the symbiotic pangenome of the nitrogen-fixing bacterium Sinorhizobium meliloti." US DOE Joint Genome Institute Galardini M., Mengoni A., Brilli M., Pini F., Fioravanti A., Lucas S., Lapidus A., Cheng J.F., Goodwin L., Pitluck S., Land M., Hauser L., Woyke T., Mikhailova N., Ivanova N., Daligault H., Bruce D., Detter C. , Tapia R., Han C., Teshima H., Mocali S., Bazzicalupo M., Biondi E.G. BMC Genomics 12:235-235(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: BL225C.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002740 Genomic DNA. Translation: AEG05634.1.
RefSeq	YP_005714877.1. NC_017322.1.
3D structure databases
ProteinModelPortal	F6BNC3.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEG05634; AEG05634; SinmeB_2737.
GeneID	12302975.
KEGG	smq:SinmeB_2737.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01971.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

F6BNC3_SINMB

Accession

Primary (citable) accession number: F6BNC3

Entry history

Integrated into UniProtKB/TrEMBL:	July 27, 2011
Last sequence update:	July 27, 2011
Last modified:	April 3, 2013
This is version 13 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)