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F6BMT3 (F6BMT3_SINMB) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 14. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:SinmeB_1662 EMBL AEG04573.1
OrganismSinorhizobium meliloti (strain BL225C) [Complete proteome] [HAMAP] EMBL AEG04573.1
Taxonomic identifier698936 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium

Protein attributes

Sequence length336 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL AEG04573.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
F6BMT3 [UniParc].

Last modified July 27, 2011. Version 1.
Checksum: C810BEA6924EF9EB

FASTA33637,650
        10         20         30         40         50         60 
MARASSKKPR DLPPTDPMPA RVDPCLATLV DKPPKGPDWA YEVKWDGYRI AVHIEPGRVR 

        70         80         90        100        110        120 
ILTRGGYDWT ERFPSIVDDA RRLAVKTAIL DGEAVVLDDK GRSDFGMLQR ALGRLPSAVE 

       130        140        150        160        170        180 
AGAIVFYAFD LLYLDGRDLR RLPLRERRRL LEPLVACPEG AVRLSEEVQA DGDEFFRVAC 

       190        200        210        220        230        240 
AHGIEGIIAK HVEKPYRSGR GEWWQKITCK RRDSFVIVGF EPSTVPGHLG RLLLAARKDG 

       250        260        270        280        290        300 
ELVYVGGCGT GWSNQLSREL RKLLEGMATK TPAVSLRRKG AVFVEPVLVA EVEYRAWTDD 

       310        320        330 
GKLRHASFKG IRQRADDAVV FEMADNIRSG FDDRIE 

« Hide

References

[1]"Exploring the symbiotic pangenome of the nitrogen-fixing bacterium Sinorhizobium meliloti."
US DOE Joint Genome Institute
Galardini M., Mengoni A., Brilli M., Pini F., Fioravanti A., Lucas S., Lapidus A., Cheng J.F., Goodwin L., Pitluck S., Land M., Hauser L., Woyke T., Mikhailova N., Ivanova N., Daligault H., Bruce D., Detter C. expand/collapse author list , Tapia R., Han C., Teshima H., Mocali S., Bazzicalupo M., Biondi E.G.
BMC Genomics 12:235-235(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: BL225C.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002740 Genomic DNA. Translation: AEG04573.1.
RefSeqYP_005713816.1. NC_017322.1.

3D structure databases

ProteinModelPortalF6BMT3.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEG04573; AEG04573; SinmeB_1662.
GeneID12305380.
KEGGsmq:SinmeB_1662.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF6BMT3_SINMB
AccessionPrimary (citable) accession number: F6BMT3
Entry history
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: April 16, 2014
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)