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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Thexy_0579

Organism
Thermoanaerobacterium xylanolyticum (strain ATCC 49914 / DSM 7097 / LX-11)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciTXYL858215:GHCH-616-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Thexy_0579Imported
OrganismiThermoanaerobacterium xylanolyticum (strain ATCC 49914 / DSM 7097 / LX-11)Imported
Taxonomic identifieri858215 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaThermoanaerobacteralesThermoanaerobacterales Family III. Incertae SedisThermoanaerobacterium
ProteomesiUP000007239 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi858215.Thexy_0579.

Structurei

3D structure databases

ProteinModelPortaliF6BHW1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK01971.
OMAiVEVKYGQ.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F6BHW1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSLMDEKISP MLAISGNVFD DPSWVYEIKW DGSRTIAFLS STTKLQDRRL
60 70 80 90 100
VDISHQFPEL MEVNKCLKSN EAILDGELIV LKDNKPSYRN IMMRKHQQNK
110 120 130 140 150
LKIELLSKYN PAIFITWDVI YVDGKELLNY PLIKRKEILS KIVSEGNLIR
160 170 180 190 200
ISDYIFGQGK TLFAETGKKQ LEGVMAKKAD SKYYLGKRSS LWQKFKHHII
210 220 230 240 250
LNAVILGYKI DKTALVLGLY NEDDKLVHIG NVESGISQKE LSSFLEVAND
260 270 280 290 300
LKVNPEFYGL AINNVQWIMP FIVCKVKFME WSENFKMRAP SFLEFALDVK

PTECRFM
Length:307
Mass (Da):35,477
Last modified:July 27, 2011 - v1
Checksum:i747381AA61B829DF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002739 Genomic DNA. Translation: AEF16630.1.
RefSeqiWP_013787381.1. NC_015555.1.

Genome annotation databases

EnsemblBacteriaiAEF16630; AEF16630; Thexy_0579.
KEGGitxy:Thexy_0579.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002739 Genomic DNA. Translation: AEF16630.1.
RefSeqiWP_013787381.1. NC_015555.1.

3D structure databases

ProteinModelPortaliF6BHW1.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi858215.Thexy_0579.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEF16630; AEF16630; Thexy_0579.
KEGGitxy:Thexy_0579.

Phylogenomic databases

KOiK01971.
OMAiVEVKYGQ.

Enzyme and pathway databases

BioCyciTXYL858215:GHCH-616-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Thermoanaerobacterium xylanolyticum LX-11."
    Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Mikhailova N., Lu M., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Hemme C., Woyke T.
    Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiF6BHW1_THEXL
AccessioniPrimary (citable) accession number: F6BHW1
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: July 22, 2015
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.