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F6BG45 (F6BG45_THEXL) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 14. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length232 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Also processes some mRNAs, and tRNAs when they are encoded in the rRNA operon By similarity. HAMAP-Rule MF_00104

Catalytic activity

Endonucleolytic cleavage to 5'-phosphomonoester. HAMAP-Rule MF_00104 SAAS SAAS011907

Cofactor

Mg2+ By similarity. HAMAP-Rule MF_00104 SAAS SAAS000999

Subunit structure

Homodimer By similarity. HAMAP-Rule MF_00104 SAAS SAAS011907

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00104 SAAS SAAS011907.

Sequence similarities

Contains 1 DRBM (double-stranded RNA-binding) domain. HAMAP-Rule MF_00104 SAAS SAAS011907

Contains 1 RNase III domain. HAMAP-Rule MF_00104 SAAS SAAS011907

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Domain7 – 135129RNase III By similarity HAMAP-Rule MF_00104
Domain162 – 23170DRBM By similarity HAMAP-Rule MF_00104

Sites

Active site521 By similarity HAMAP-Rule MF_00104
Active site1241 By similarity HAMAP-Rule MF_00104
Metal binding481Magnesium By similarity HAMAP-Rule MF_00104
Metal binding1211Magnesium By similarity HAMAP-Rule MF_00104
Metal binding1241Magnesium By similarity HAMAP-Rule MF_00104

Sequences

Sequence LengthMass (Da)Tools
F6BG45 [UniParc].

Last modified July 27, 2011. Version 1.
Checksum: DB2816CCA8800293

FASTA23226,540
        10         20         30         40         50         60 
MELSDRYENL EKNMGYTFNN KKLLKNALTH SSWANESKNF LSSNERLEFL GDSVLSIVIS 

        70         80         90        100        110        120 
EYLYKNRTDL EEGYLSKYRA EIVCEPSLAR CAREIDIGKY LNIGRGEEMT GGRNRDSILA 

       130        140        150        160        170        180 
DAMEALIAAV YLDSDLKTVS EVVLRLFEKI INEVLSGLIY RDYKTKLQEV TQKMGSERVI 

       190        200        210        220        230 
YKLIDEYGPD HNKMFVIEVF VGENRLGRGK GRSKKEAEQY AAMEALSKMG LI

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References

[1]"Complete sequence of Thermoanaerobacterium xylanolyticum LX-11."
Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Mikhailova N., Lu M., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Hemme C., Woyke T.
Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP002739 Genomic DNA. Translation: AEF17390.1.
RefSeqYP_004471062.1. NC_015555.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEF17390; AEF17390; Thexy_1357.
GeneID10661011.
KEGGtxy:Thexy_1357.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK03685.

Family and domain databases

Gene3D1.10.1520.10. 1 hit.
3.30.160.20. 1 hit.
HAMAPMF_00104. RNase_III.
InterProIPR001159. Ds-RNA-bd.
IPR014720. dsRNA-bd-like_dom.
IPR011907. RNase_III.
IPR000999. RNase_III_dom.
[Graphical view]
PANTHERPTHR11207. PTHR11207. 1 hit.
PfamPF00035. dsrm. 1 hit.
PF00636. Ribonuclease_3. 1 hit.
[Graphical view]
SMARTSM00358. DSRM. 1 hit.
SM00535. RIBOc. 1 hit.
[Graphical view]
SUPFAMSSF69065. RNase_III. 1 hit.
TIGRFAMsTIGR02191. RNaseIII. 1 hit.
PROSITEPS50137. DS_RBD. 1 hit.
PS00517. RNASE_3_1. 1 hit.
PS50142. RNASE_3_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF6BG45_THEXL
AccessionPrimary (citable) accession number: F6BG45
Entry history
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: April 3, 2013
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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