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F6B0K4

- F6B0K4_DELSC

UniProt

F6B0K4 - F6B0K4_DELSC

Protein
Submitted name:

DNA ligase D

Gene

DelCs14_2489

Organism
Delftia sp. (strain Cs1-4)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 16 (01 Oct 2014)
      Sequence version 1 (27 Jul 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciDSP742013:GH2F-2536-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase DImported
    Gene namesi
    Ordered Locus Names:DelCs14_2489Imported
    OrganismiDelftia sp. (strain Cs1-4)Imported
    Taxonomic identifieri742013 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeDelftia
    ProteomesiUP000009225: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F6B0K4-1 [UniParc]FASTAAdd to Basket

    « Hide

    MPATRSKSQA SRPARPTKGA TKAATPQASL ALYRQKRDFT RTPEPSAEPS    50
    SETIAGQPGA GALQFVIQKH WASHLHYDFR LELDGSMKSW AVPKGPSYDP 100
    ADKRMAVQVE DHPMAYNRFE GQIPPGQYGA GKVIIWDRGT WLPEGDAAEG 150
    YRKGKLKFEL RGHKLQGRWA LVRMRGKDDA KKPAWLLIKE HDGLERAASE 200
    FNVVEDMPDS VAGLPLPTAT APITTPVTTP VATPVAAPMP QSIAPQLATL 250
    VDHAPADAGQ WIFESKFDGY RLLARIEDGA VRLFTRNGKD WTTKMPALAR 300
    AFAALPLQSG WVDGEVLMLD SDSRPDFQAL QNAFDGERTD HLVFFAFDLL 350
    WQDGQDLRPQ PVEQRRQQLQ SLLHKAPSDR LRFSEAFDAP PADLVAAACQ 400
    LGLEGVIGKR RGSAYASRRS ADWIKLKCGL RQEFVIAGYT DPQGTRTGLG 450
    ALILAVHGED GQLRAAGKVG TGFNRRTLAD LRQRLERLAT GTSPLADSRG 500
    LGSGVHWVRP TLLAEVSFAQ WTEDGQVRHA VFHGLRADKP ARSIVKEEPQ 550
    HVPSTASSAS AAAMPGAARP KTRNARAARL PASMTITHPE RVIDPSTGIT 600
    KMDLARYYAT VAPFMITHLK SRPVAMVRAP DGIEGELFFQ KHLDQAPLQG 650
    IAALSPELDP GHAPLMEVSR REGLVAAAQM NTIEWHTWNA RKDRIDRPDR 700
    MTFDLDPGEG VPWQQVQEAA SLLHVLLQEL ELPAFLKTSG GKGLHVVVPI 750
    KRLLDWDTVK AFSQAVVQHL AHAVPQRFVA KSGPRNRVGK IFVDYLRNGF 800
    GATTACAWTA RARPGMGISV PVAWNELDRL TGGAHWTIRS VDQRLRLGNS 850
    PWEHYGTAAV GLGRAMKALG FEAQR 875
    Length:875
    Mass (Da):95,990
    Last modified:July 27, 2011 - v1
    Checksum:iC99012A8938A632F
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002735 Genomic DNA. Translation: AEF89502.1.
    RefSeqiWP_013801929.1. NC_015563.1.
    YP_004487857.1. NC_015563.1.

    Genome annotation databases

    EnsemblBacteriaiAEF89502; AEF89502; DelCs14_2489.
    GeneIDi10639341.
    KEGGidel:DelCs14_2489.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002735 Genomic DNA. Translation: AEF89502.1 .
    RefSeqi WP_013801929.1. NC_015563.1.
    YP_004487857.1. NC_015563.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEF89502 ; AEF89502 ; DelCs14_2489 .
    GeneIDi 10639341.
    KEGGi del:DelCs14_2489.

    Phylogenomic databases

    KOi K01971.

    Enzyme and pathway databases

    BioCyci DSP742013:GH2F-2536-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of Delftia sp. Cs1-4."
      Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Mikhailova N., Teshima H., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Bradfield C., Sheety A.
      , Cheng S., Chain P., Denef V., Hickey W., Woyke T.
      Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Cs1-4Imported.

    Entry informationi

    Entry nameiF6B0K4_DELSC
    AccessioniPrimary (citable) accession number: F6B0K4
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 27, 2011
    Last sequence update: July 27, 2011
    Last modified: October 1, 2014
    This is version 16 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3