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F6B0K4

- F6B0K4_DELSC

UniProt

F6B0K4 - F6B0K4_DELSC

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Protein
Submitted name:

DNA ligase D

Gene

DelCs14_2489

Organism
Delftia sp. (strain Cs1-4)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciDSP742013:GH2F-2536-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:DelCs14_2489Imported
OrganismiDelftia sp. (strain Cs1-4)Imported
Taxonomic identifieri742013 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeDelftia
ProteomesiUP000009225: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F6B0K4-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MPATRSKSQA SRPARPTKGA TKAATPQASL ALYRQKRDFT RTPEPSAEPS
60 70 80 90 100
SETIAGQPGA GALQFVIQKH WASHLHYDFR LELDGSMKSW AVPKGPSYDP
110 120 130 140 150
ADKRMAVQVE DHPMAYNRFE GQIPPGQYGA GKVIIWDRGT WLPEGDAAEG
160 170 180 190 200
YRKGKLKFEL RGHKLQGRWA LVRMRGKDDA KKPAWLLIKE HDGLERAASE
210 220 230 240 250
FNVVEDMPDS VAGLPLPTAT APITTPVTTP VATPVAAPMP QSIAPQLATL
260 270 280 290 300
VDHAPADAGQ WIFESKFDGY RLLARIEDGA VRLFTRNGKD WTTKMPALAR
310 320 330 340 350
AFAALPLQSG WVDGEVLMLD SDSRPDFQAL QNAFDGERTD HLVFFAFDLL
360 370 380 390 400
WQDGQDLRPQ PVEQRRQQLQ SLLHKAPSDR LRFSEAFDAP PADLVAAACQ
410 420 430 440 450
LGLEGVIGKR RGSAYASRRS ADWIKLKCGL RQEFVIAGYT DPQGTRTGLG
460 470 480 490 500
ALILAVHGED GQLRAAGKVG TGFNRRTLAD LRQRLERLAT GTSPLADSRG
510 520 530 540 550
LGSGVHWVRP TLLAEVSFAQ WTEDGQVRHA VFHGLRADKP ARSIVKEEPQ
560 570 580 590 600
HVPSTASSAS AAAMPGAARP KTRNARAARL PASMTITHPE RVIDPSTGIT
610 620 630 640 650
KMDLARYYAT VAPFMITHLK SRPVAMVRAP DGIEGELFFQ KHLDQAPLQG
660 670 680 690 700
IAALSPELDP GHAPLMEVSR REGLVAAAQM NTIEWHTWNA RKDRIDRPDR
710 720 730 740 750
MTFDLDPGEG VPWQQVQEAA SLLHVLLQEL ELPAFLKTSG GKGLHVVVPI
760 770 780 790 800
KRLLDWDTVK AFSQAVVQHL AHAVPQRFVA KSGPRNRVGK IFVDYLRNGF
810 820 830 840 850
GATTACAWTA RARPGMGISV PVAWNELDRL TGGAHWTIRS VDQRLRLGNS
860 870
PWEHYGTAAV GLGRAMKALG FEAQR
Length:875
Mass (Da):95,990
Last modified:July 27, 2011 - v1
Checksum:iC99012A8938A632F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002735 Genomic DNA. Translation: AEF89502.1.
RefSeqiWP_013801929.1. NC_015563.1.
YP_004487857.1. NC_015563.1.

Genome annotation databases

EnsemblBacteriaiAEF89502; AEF89502; DelCs14_2489.
GeneIDi10639341.
KEGGidel:DelCs14_2489.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002735 Genomic DNA. Translation: AEF89502.1 .
RefSeqi WP_013801929.1. NC_015563.1.
YP_004487857.1. NC_015563.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AEF89502 ; AEF89502 ; DelCs14_2489 .
GeneIDi 10639341.
KEGGi del:DelCs14_2489.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci DSP742013:GH2F-2536-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of Delftia sp. Cs1-4."
    Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Mikhailova N., Teshima H., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Bradfield C., Sheety A.
    , Cheng S., Chain P., Denef V., Hickey W., Woyke T.
    Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Cs1-4Imported.

Entry informationi

Entry nameiF6B0K4_DELSC
AccessioniPrimary (citable) accession number: F6B0K4
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: October 1, 2014
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3