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F6B0K4 (F6B0K4_DELSC) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 11. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
DNA ligase D EMBL AEF89502.1
Gene names
Ordered Locus Names:DelCs14_2489
OrganismDelftia sp. (strain Cs1-4) [Complete proteome] [HAMAP] EMBL AEF89502.1
Taxonomic identifier742013 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Comamonadaceae › Delftia

Protein attributes

Sequence length875 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL AEF89502.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

DNA primase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
F6B0K4 [UniParc].

Last modified July 27, 2011. Version 1.
Checksum: C99012A8938A632F

FASTA87595,990
        10         20         30         40         50         60 
MPATRSKSQA SRPARPTKGA TKAATPQASL ALYRQKRDFT RTPEPSAEPS SETIAGQPGA 

        70         80         90        100        110        120 
GALQFVIQKH WASHLHYDFR LELDGSMKSW AVPKGPSYDP ADKRMAVQVE DHPMAYNRFE 

       130        140        150        160        170        180 
GQIPPGQYGA GKVIIWDRGT WLPEGDAAEG YRKGKLKFEL RGHKLQGRWA LVRMRGKDDA 

       190        200        210        220        230        240 
KKPAWLLIKE HDGLERAASE FNVVEDMPDS VAGLPLPTAT APITTPVTTP VATPVAAPMP 

       250        260        270        280        290        300 
QSIAPQLATL VDHAPADAGQ WIFESKFDGY RLLARIEDGA VRLFTRNGKD WTTKMPALAR 

       310        320        330        340        350        360 
AFAALPLQSG WVDGEVLMLD SDSRPDFQAL QNAFDGERTD HLVFFAFDLL WQDGQDLRPQ 

       370        380        390        400        410        420 
PVEQRRQQLQ SLLHKAPSDR LRFSEAFDAP PADLVAAACQ LGLEGVIGKR RGSAYASRRS 

       430        440        450        460        470        480 
ADWIKLKCGL RQEFVIAGYT DPQGTRTGLG ALILAVHGED GQLRAAGKVG TGFNRRTLAD 

       490        500        510        520        530        540 
LRQRLERLAT GTSPLADSRG LGSGVHWVRP TLLAEVSFAQ WTEDGQVRHA VFHGLRADKP 

       550        560        570        580        590        600 
ARSIVKEEPQ HVPSTASSAS AAAMPGAARP KTRNARAARL PASMTITHPE RVIDPSTGIT 

       610        620        630        640        650        660 
KMDLARYYAT VAPFMITHLK SRPVAMVRAP DGIEGELFFQ KHLDQAPLQG IAALSPELDP 

       670        680        690        700        710        720 
GHAPLMEVSR REGLVAAAQM NTIEWHTWNA RKDRIDRPDR MTFDLDPGEG VPWQQVQEAA 

       730        740        750        760        770        780 
SLLHVLLQEL ELPAFLKTSG GKGLHVVVPI KRLLDWDTVK AFSQAVVQHL AHAVPQRFVA 

       790        800        810        820        830        840 
KSGPRNRVGK IFVDYLRNGF GATTACAWTA RARPGMGISV PVAWNELDRL TGGAHWTIRS 

       850        860        870 
VDQRLRLGNS PWEHYGTAAV GLGRAMKALG FEAQR

« Hide

References

[1]"Complete sequence of Delftia sp. Cs1-4."
Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Mikhailova N., Teshima H., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Bradfield C., Sheety A. expand/collapse author list , Cheng S., Chain P., Denef V., Hickey W., Woyke T.
Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Cs1-4.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP002735 Genomic DNA. Translation: AEF89502.1.
RefSeqYP_004487857.1. NC_015563.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEF89502; AEF89502; DelCs14_2489.
GeneID10639341.
KEGGdel:DelCs14_2489.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycDSP742013:GH2F-2536-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF6B0K4_DELSC
AccessionPrimary (citable) accession number: F6B0K4
Entry history
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: April 3, 2013
This is version 11 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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