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F6B0K4

- F6B0K4_DELSC

UniProt

F6B0K4 - F6B0K4_DELSC

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Protein
Submitted name:

DNA ligase D

Gene
DelCs14_2489
Organism
Delftia sp. (strain Cs1-4)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciDSP742013:GH2F-2536-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:DelCs14_2489Imported
OrganismiDelftia sp. (strain Cs1-4)Imported
Taxonomic identifieri742013 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeDelftia
ProteomesiUP000009225: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F6B0K4-1 [UniParc]FASTAAdd to Basket

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MPATRSKSQA SRPARPTKGA TKAATPQASL ALYRQKRDFT RTPEPSAEPS    50
SETIAGQPGA GALQFVIQKH WASHLHYDFR LELDGSMKSW AVPKGPSYDP 100
ADKRMAVQVE DHPMAYNRFE GQIPPGQYGA GKVIIWDRGT WLPEGDAAEG 150
YRKGKLKFEL RGHKLQGRWA LVRMRGKDDA KKPAWLLIKE HDGLERAASE 200
FNVVEDMPDS VAGLPLPTAT APITTPVTTP VATPVAAPMP QSIAPQLATL 250
VDHAPADAGQ WIFESKFDGY RLLARIEDGA VRLFTRNGKD WTTKMPALAR 300
AFAALPLQSG WVDGEVLMLD SDSRPDFQAL QNAFDGERTD HLVFFAFDLL 350
WQDGQDLRPQ PVEQRRQQLQ SLLHKAPSDR LRFSEAFDAP PADLVAAACQ 400
LGLEGVIGKR RGSAYASRRS ADWIKLKCGL RQEFVIAGYT DPQGTRTGLG 450
ALILAVHGED GQLRAAGKVG TGFNRRTLAD LRQRLERLAT GTSPLADSRG 500
LGSGVHWVRP TLLAEVSFAQ WTEDGQVRHA VFHGLRADKP ARSIVKEEPQ 550
HVPSTASSAS AAAMPGAARP KTRNARAARL PASMTITHPE RVIDPSTGIT 600
KMDLARYYAT VAPFMITHLK SRPVAMVRAP DGIEGELFFQ KHLDQAPLQG 650
IAALSPELDP GHAPLMEVSR REGLVAAAQM NTIEWHTWNA RKDRIDRPDR 700
MTFDLDPGEG VPWQQVQEAA SLLHVLLQEL ELPAFLKTSG GKGLHVVVPI 750
KRLLDWDTVK AFSQAVVQHL AHAVPQRFVA KSGPRNRVGK IFVDYLRNGF 800
GATTACAWTA RARPGMGISV PVAWNELDRL TGGAHWTIRS VDQRLRLGNS 850
PWEHYGTAAV GLGRAMKALG FEAQR 875
Length:875
Mass (Da):95,990
Last modified:July 27, 2011 - v1
Checksum:iC99012A8938A632F
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002735 Genomic DNA. Translation: AEF89502.1.
RefSeqiWP_013801929.1. NC_015563.1.
YP_004487857.1. NC_015563.1.

Genome annotation databases

EnsemblBacteriaiAEF89502; AEF89502; DelCs14_2489.
GeneIDi10639341.
KEGGidel:DelCs14_2489.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002735 Genomic DNA. Translation: AEF89502.1 .
RefSeqi WP_013801929.1. NC_015563.1.
YP_004487857.1. NC_015563.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AEF89502 ; AEF89502 ; DelCs14_2489 .
GeneIDi 10639341.
KEGGi del:DelCs14_2489.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci DSP742013:GH2F-2536-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of Delftia sp. Cs1-4."
    Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Mikhailova N., Teshima H., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Bradfield C., Sheety A.
    , Cheng S., Chain P., Denef V., Hickey W., Woyke T.
    Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Cs1-4.

Entry informationi

Entry nameiF6B0K4_DELSC
AccessioniPrimary (citable) accession number: F6B0K4
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: September 3, 2014
This is version 15 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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