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F6ACB0 (F6ACB0_PSEF1) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 11. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Isocitrate dehydrogenase, NADP-dependent EMBL AEF22292.1
EC=1.1.1.42 EMBL AEF22292.1
Gene names
Ordered Locus Names:Psefu_2325
OrganismPseudomonas fulva (strain 12-X) [Complete proteome] [HAMAP] EMBL AEF22292.1
Taxonomic identifier743720 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas ›

Protein attributes

Sequence length742 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Binds 1 magnesium or manganese ion per subunit By similarity. PIRSR PIRSR009407-3

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Region133 – 1408Substrate binding By similarity PIRSR PIRSR009407-2

Sites

Metal binding3511Magnesium or manganese By similarity PIRSR PIRSR009407-3
Metal binding5491Magnesium or manganese By similarity PIRSR PIRSR009407-3
Metal binding5531Magnesium or manganese By similarity PIRSR PIRSR009407-3
Binding site1461Substrate By similarity PIRSR PIRSR009407-2
Binding site5481Substrate By similarity PIRSR PIRSR009407-2
Site2561Critical for catalysis By similarity PIRSR PIRSR009407-1
Site4211Critical for catalysis By similarity PIRSR PIRSR009407-1

Sequences

Sequence LengthMass (Da)Tools
F6ACB0 [UniParc].

Last modified July 27, 2011. Version 1.
Checksum: D1EDD95F98694A49

FASTA74280,113
        10         20         30         40         50         60 
MTTRSKIIYT LTDEAPALAT YSLLPIVKAF TASSDIAVET RDISLAGRIL ALFPEFLTDA 

        70         80         90        100        110        120 
QKQGDHLAEL GALATTPEAN IIKLPNISAS VPQLKAAIKE LQSQGYALPD YPDADDSEQA 

       130        140        150        160        170        180 
RDIRSRYDKV KGSAVNPVLR EGNSDRRAPL SVKNYARKHP HKMGAWAADS KSHVAHMESG 

       190        200        210        220        230        240 
DFYGSEKAAL IDAKGSVKIE LIGADGSTTV LKEKTSVLAD EVLDCSVMSK KALRSFIAAQ 

       250        260        270        280        290        300 
IEDAKKQGVL FSVHLKATMM KVSDPIIFGQ IVAEFYKPAL EKHAAALQEA GFNLNNGIGD 

       310        320        330        340        350        360 
LYASIKKLPA DKQAEIEADI NAVYADRPAL AMVNSDKGIT NLHVPSDVIV DASMPAMIRD 

       370        380        390        400        410        420 
SGRMWNTAGE LQDAKAVIPD RCYAGIYQAV IEDCKANGAF NPTTMGSVPN VGLMAQKAEE 

       430        440        450        460        470        480 
YGSHDKTFQI QAAGVVRVSD ANGKVLMEQK VEEGDIFRMC QTKDAPIQDW VKLAVNRARL 

       490        500        510        520        530        540 
SNTPAVFWLD PARAHDAEMI KKVEKYLKDH DTSGLDIRIL APVDAIKFSL ARIREGKDTI 

       550        560        570        580        590        600 
SVTGNVLRDY LTDLFPIMEL GTSAKMLSIV PLMNGGGLFE TGAGGSAPKH VQQLVEENFL 

       610        620        630        640        650        660 
RWDSLGEFLA LAASLEHLGN TYDNPKALVL SKTLDQATGQ FLDNDKSPAR KVGGIDNRGS 

       670        680        690        700        710        720 
HFYLALYWAQ ALAAQSEDAA LKAQFAPLAK TLTDNEAKIV AELGAVQGKP ADIGGYYAPN 

       730        740 
KELTEKVMRP SATLNAALAS LA

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References

[1]"Complete sequence of Pseudomonas fulva 12-X."
US DOE Joint Genome Institute
Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Mikhailova N., Pagani I., Davenport K., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Lcollab F.I., Woyke T.
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 12-X.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP002727 Genomic DNA. Translation: AEF22292.1.
RefSeqYP_004474386.1. NC_015556.1.

3D structure databases

ProteinModelPortalF6ACB0.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEF22292; AEF22292; Psefu_2325.
GeneID10657407.
KEGGpfv:Psefu_2325.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK00031.
OMAFRMCQTK.

Enzyme and pathway databases

BioCycPFUL743720:GHQV-2358-MONOMER.

Family and domain databases

Gene3D3.40.718.10. 3 hits.
InterProIPR004436. Isocitrate_DH_NADP_mono.
IPR024084. IsoPropMal-DH-like_dom.
[Graphical view]
PfamPF03971. IDH. 1 hit.
[Graphical view]
PIRSFPIRSF009407. IDH_monmr. 1 hit.
TIGRFAMsTIGR00178. monomer_idh. 1 hit.
ProtoNetSearch...

Entry information

Entry nameF6ACB0_PSEF1
AccessionPrimary (citable) accession number: F6ACB0
Entry history
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: April 3, 2013
This is version 11 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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