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F6A9X4 (F6A9X4_PSEF1) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 13. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Psefu_2075 EMBL AEF22046.1
OrganismPseudomonas fulva (strain 12-X) [Complete proteome] [HAMAP] EMBL AEF22046.1
Taxonomic identifier743720 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas

Protein attributes

Sequence length579 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
F6A9X4 [UniParc].

Last modified July 27, 2011. Version 1.
Checksum: CA1E93CECC99472F

FASTA57965,045
        10         20         30         40         50         60 
MIAFAQLYAR LDATTSSNAK LAALQDYLRD AEPADAAWAV YFLAGGRPRQ LVPSRQLREL 

        70         80         90        100        110        120 
AMQRAGLSDW LFEESYSAVG DLAETIALLL PEATSTSEDG LAVWVEQKLL PLRGLPPDEL 

       130        140        150        160        170        180 
AMRLDALWAQ LDRQSLMVSI KLITGAFRVG VSKLLVTRAL AAIAEVDAKR VAQRLVGYTD 

       190        200        210        220        230        240 
LSNRPTAASY ERLIAAESED EHAQRGGQPY PFFLAHPLQR PLEEFDASLG SPGDWLIEWK 

       250        260        270        280        290        300 
WDGIRAQLVK RDGQLWVWSR GEELISERFP ELQELAPLLP DGTVIDGELV VWRHAPEATA 

       310        320        330        340        350        360 
RQGELMAAAA DEPAERLNDQ VEEQLERFGI QPFALLQQRI GRKTLSRKLL EEVPVAVLAY 

       370        380        390        400        410        420 
DLLEWQGEDW RSHPQHQRRA QMEQVVARCA SPRLMPSPLL HGDTWQALAE QREASRSLGV 

       430        440        450        460        470        480 
EGMMLKARES AYGVGRSKDV GVWWKWKIDP LSVDAVLIYA QRGHGRRASL YSDYTFAVWD 

       490        500        510        520        530        540 
GAPGDPERRL VPFAKAYSGL TDEEMRKVDA IVRKTTVEKF GPVRSVTPSL VFELGFEGIA 

       550        560        570 
RSPRHKSGIA VRFPRMLRWR HDKGVEEADT LELLQELLP 

« Hide

References

[1]"Complete sequence of Pseudomonas fulva 12-X."
US DOE Joint Genome Institute
Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Mikhailova N., Pagani I., Davenport K., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Lcollab F.I., Woyke T.
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 12-X.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002727 Genomic DNA. Translation: AEF22046.1.
RefSeqYP_004474140.1. NC_015556.1.

3D structure databases

ProteinModelPortalF6A9X4.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEF22046; AEF22046; Psefu_2075.
GeneID10658892.
KEGGpfv:Psefu_2075.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.
OMARVWLWSR.

Enzyme and pathway databases

BioCycPFUL743720:GHQV-2105-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR04120. DNA_lig_bact. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF6A9X4_PSEF1
AccessionPrimary (citable) accession number: F6A9X4
Entry history
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: May 14, 2014
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)