F6A9X4 (F6A9X4_PSEF1) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP dependent DNA ligase EMBL AEF22046.1

Gene names

Ordered Locus Names:

Psefu_2075

Organism

Pseudomonas fulva (strain 12-X) [Complete proteome] [HAMAP] EMBL AEF22046.1

Taxonomic identifier

743720 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas › Pseudomonas putida group › Pseudomonas fulva

Protein attributes

Sequence length	579 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL AEF22046.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F6A9X4 [UniParc]. Last modified July 27, 2011. Version 1. Checksum: CA1E93CECC99472F	FASTA	579	65,045
	10 20 30 40 50 60 MIAFAQLYAR LDATTSSNAK LAALQDYLRD AEPADAAWAV YFLAGGRPRQ LVPSRQLREL 70 80 90 100 110 120 AMQRAGLSDW LFEESYSAVG DLAETIALLL PEATSTSEDG LAVWVEQKLL PLRGLPPDEL 130 140 150 160 170 180 AMRLDALWAQ LDRQSLMVSI KLITGAFRVG VSKLLVTRAL AAIAEVDAKR VAQRLVGYTD 190 200 210 220 230 240 LSNRPTAASY ERLIAAESED EHAQRGGQPY PFFLAHPLQR PLEEFDASLG SPGDWLIEWK 250 260 270 280 290 300 WDGIRAQLVK RDGQLWVWSR GEELISERFP ELQELAPLLP DGTVIDGELV VWRHAPEATA 310 320 330 340 350 360 RQGELMAAAA DEPAERLNDQ VEEQLERFGI QPFALLQQRI GRKTLSRKLL EEVPVAVLAY 370 380 390 400 410 420 DLLEWQGEDW RSHPQHQRRA QMEQVVARCA SPRLMPSPLL HGDTWQALAE QREASRSLGV 430 440 450 460 470 480 EGMMLKARES AYGVGRSKDV GVWWKWKIDP LSVDAVLIYA QRGHGRRASL YSDYTFAVWD 490 500 510 520 530 540 GAPGDPERRL VPFAKAYSGL TDEEMRKVDA IVRKTTVEKF GPVRSVTPSL VFELGFEGIA 550 560 570 RSPRHKSGIA VRFPRMLRWR HDKGVEEADT LELLQELLP

References

[1]

"Complete sequence of Pseudomonas fulva 12-X." US DOE Joint Genome Institute Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Mikhailova N., Pagani I., Davenport K., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Lcollab F.I., Woyke T. Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 12-X.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002727 Genomic DNA. Translation: AEF22046.1.
RefSeq	YP_004474140.1. NC_015556.1.
3D structure databases
ProteinModelPortal	F6A9X4.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEF22046; AEF22046; Psefu_2075.
GeneID	10658892.
KEGG	pfv:Psefu_2075.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01971.
OMA	AYDLLEW.
Enzyme and pathway databases
BioCyc	PFUL743720:GHQV-2105-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

F6A9X4_PSEF1

Accession

Primary (citable) accession number: F6A9X4

Entry history

Integrated into UniProtKB/TrEMBL:	July 27, 2011
Last sequence update:	July 27, 2011
Last modified:	April 3, 2013
This is version 11 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)