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F6A381

- F6A381_GARVH

UniProt

F6A381 - F6A381_GARVH

Protein

Alpha-amylase

Gene

HMPREF9231_0972

Organism
Gardnerella vaginalis (strain HMP9231)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 17 (01 Oct 2014)
      Sequence version 1 (27 Jul 2011)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.UniRule annotation

    GO - Molecular functioni

    1. alpha-amylase activity Source: UniProtKB-EC
    2. cation binding Source: InterPro

    GO - Biological processi

    1. carbohydrate metabolic process Source: UniProtKB-KW

    Keywords - Molecular functioni

    GlycosidaseUniRule annotation, Hydrolase

    Keywords - Biological processi

    Carbohydrate metabolismUniRule annotation

    Enzyme and pathway databases

    BioCyciGVAG1009464:GLDL-966-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Alpha-amylaseUniRule annotation (EC:3.2.1.1UniRule annotation)
    Gene namesi
    Ordered Locus Names:HMPREF9231_0972Imported
    OrganismiGardnerella vaginalis (strain HMP9231)Imported
    Taxonomic identifieri1009464 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeBifidobacterialesBifidobacteriaceaeGardnerella
    ProteomesiUP000009050: Chromosome

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the glycosyl hydrolase 13 family.UniRule annotation

    Phylogenomic databases

    KOiK01176.
    OrthoDBiEOG66TG1T.

    Family and domain databases

    Gene3Di2.60.40.1180. 1 hit.
    3.20.20.80. 1 hit.
    InterProiIPR006048. A-amylase_b_C.
    IPR006046. Alpha_amylase.
    IPR015902. Glyco_hydro_13.
    IPR013780. Glyco_hydro_13_b.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR006589. Glyco_hydro_13_sub_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view]
    PANTHERiPTHR10357. PTHR10357. 1 hit.
    PfamiPF00128. Alpha-amylase. 1 hit.
    PF02806. Alpha-amylase_C. 1 hit.
    [Graphical view]
    PRINTSiPR00110. ALPHAAMYLASE.
    SMARTiSM00642. Aamy. 1 hit.
    SM00632. Aamy_C. 1 hit.
    [Graphical view]
    SUPFAMiSSF51445. SSF51445. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    F6A381-1 [UniParc]FASTAAdd to Basket

    « Hide

    MIHGIEVFTS FNKKALVKLK FVLARVAAIT SCVAMILAGA VVASSPAIAD    50
    EGAKSSQKTT QKGVIVTAFQ QNWRSIAKEC KKTYGPEGVK YVQVSPPQDH 100
    IKGDQWWTSY QPVSYKLNSK LGTEDEFKKM ITTCKASGIG IIADAVINHT 150
    TGFANKDTVG VGGSKYDAAN QSFPDAGYTK DDFHKSTENI NTYRKAEIVW 200
    THRLVGLLDL DTSNPHVQKT LGEYFAHMLK LGVDGFRVDA AKHMSPQDVK 250
    GIKDAAAEAA GTTPDKIWWM QETIGFSEQD PRIQPDQYLQ TGEVNEFEYS 300
    YRLRNYFYGS IENLKHITDK LIPSKKAAIF VTNWDTERDN ASRVLTYKDG 350
    KKYELANTFM LAYPYGTPNV FSGYEFTKRD EGAPGATQTS IPDVSCAKDS 400
    KWQCTQRLTS IRGMIGFYNA VRGTKVTNWQ DDDDNNVAFS RGNKGFLAIN 450
    NTEEPQKVSY KTDLPDGEYC NVYESKDCTK TVSVSGGKVK TTVDAESAVA 500
    LHVNAVKSLG NARARNVTIF ICVFVASICT FVVNRRFVEK SKKLAKGNSD 550
    GVKTGETKGK 560
    Length:560
    Mass (Da):61,894
    Last modified:July 27, 2011 - v1
    Checksum:i942D9C9961ED437D
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002725 Genomic DNA. Translation: AEF31021.1.
    RefSeqiYP_005838300.1. NC_017456.1.

    Genome annotation databases

    EnsemblBacteriaiAEF31021; AEF31021; HMPREF9231_0972.
    GeneIDi12445077.
    KEGGigvh:HMPREF9231_0972.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002725 Genomic DNA. Translation: AEF31021.1 .
    RefSeqi YP_005838300.1. NC_017456.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEF31021 ; AEF31021 ; HMPREF9231_0972 .
    GeneIDi 12445077.
    KEGGi gvh:HMPREF9231_0972.

    Phylogenomic databases

    KOi K01176.
    OrthoDBi EOG66TG1T.

    Enzyme and pathway databases

    BioCyci GVAG1009464:GLDL-966-MONOMER.

    Family and domain databases

    Gene3Di 2.60.40.1180. 1 hit.
    3.20.20.80. 1 hit.
    InterProi IPR006048. A-amylase_b_C.
    IPR006046. Alpha_amylase.
    IPR015902. Glyco_hydro_13.
    IPR013780. Glyco_hydro_13_b.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR006589. Glyco_hydro_13_sub_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view ]
    PANTHERi PTHR10357. PTHR10357. 1 hit.
    Pfami PF00128. Alpha-amylase. 1 hit.
    PF02806. Alpha-amylase_C. 1 hit.
    [Graphical view ]
    PRINTSi PR00110. ALPHAAMYLASE.
    SMARTi SM00642. Aamy. 1 hit.
    SM00632. Aamy_C. 1 hit.
    [Graphical view ]
    SUPFAMi SSF51445. SSF51445. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of Gardnerella vaginalis HMP9231."
      Durkin A.S., Kim M.K., Hostetler J., Torralba M., Gillis M., Methe B., Sutton G., Nelson K.E.
      Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: HMP9231Imported.

    Entry informationi

    Entry nameiF6A381_GARVH
    AccessioniPrimary (citable) accession number: F6A381
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 27, 2011
    Last sequence update: July 27, 2011
    Last modified: October 1, 2014
    This is version 17 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3