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F6A381

- F6A381_GARVH

UniProt

F6A381 - F6A381_GARVH

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Protein

Alpha-amylase

Gene
HMPREF9231_0972
Organism
Gardnerella vaginalis (strain HMP9231)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.UniRule annotation

GO - Molecular functioni

  1. catalytic activity Source: InterPro
  2. cation binding Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotation, Hydrolase

Keywords - Biological processi

Carbohydrate metabolismUniRule annotation

Enzyme and pathway databases

BioCyciGVAG1009464:GLDL-966-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Alpha-amylaseUniRule annotation (EC:3.2.1.1UniRule annotation)
Gene namesi
Ordered Locus Names:HMPREF9231_0972Imported
OrganismiGardnerella vaginalis (strain HMP9231)Imported
Taxonomic identifieri1009464 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeBifidobacterialesBifidobacteriaceaeGardnerella
ProteomesiUP000009050: Chromosome

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family.UniRule annotation

Phylogenomic databases

KOiK01176.
OrthoDBiEOG66TG1T.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR006048. A-amylase_b_C.
IPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SMARTiSM00642. Aamy. 1 hit.
SM00632. Aamy_C. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

F6A381-1 [UniParc]FASTAAdd to Basket

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MIHGIEVFTS FNKKALVKLK FVLARVAAIT SCVAMILAGA VVASSPAIAD    50
EGAKSSQKTT QKGVIVTAFQ QNWRSIAKEC KKTYGPEGVK YVQVSPPQDH 100
IKGDQWWTSY QPVSYKLNSK LGTEDEFKKM ITTCKASGIG IIADAVINHT 150
TGFANKDTVG VGGSKYDAAN QSFPDAGYTK DDFHKSTENI NTYRKAEIVW 200
THRLVGLLDL DTSNPHVQKT LGEYFAHMLK LGVDGFRVDA AKHMSPQDVK 250
GIKDAAAEAA GTTPDKIWWM QETIGFSEQD PRIQPDQYLQ TGEVNEFEYS 300
YRLRNYFYGS IENLKHITDK LIPSKKAAIF VTNWDTERDN ASRVLTYKDG 350
KKYELANTFM LAYPYGTPNV FSGYEFTKRD EGAPGATQTS IPDVSCAKDS 400
KWQCTQRLTS IRGMIGFYNA VRGTKVTNWQ DDDDNNVAFS RGNKGFLAIN 450
NTEEPQKVSY KTDLPDGEYC NVYESKDCTK TVSVSGGKVK TTVDAESAVA 500
LHVNAVKSLG NARARNVTIF ICVFVASICT FVVNRRFVEK SKKLAKGNSD 550
GVKTGETKGK 560
Length:560
Mass (Da):61,894
Last modified:July 27, 2011 - v1
Checksum:i942D9C9961ED437D
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002725 Genomic DNA. Translation: AEF31021.1.
RefSeqiYP_005838300.1. NC_017456.1.

Genome annotation databases

EnsemblBacteriaiAEF31021; AEF31021; HMPREF9231_0972.
GeneIDi12445077.
KEGGigvh:HMPREF9231_0972.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002725 Genomic DNA. Translation: AEF31021.1 .
RefSeqi YP_005838300.1. NC_017456.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AEF31021 ; AEF31021 ; HMPREF9231_0972 .
GeneIDi 12445077.
KEGGi gvh:HMPREF9231_0972.

Phylogenomic databases

KOi K01176.
OrthoDBi EOG66TG1T.

Enzyme and pathway databases

BioCyci GVAG1009464:GLDL-966-MONOMER.

Family and domain databases

Gene3Di 2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProi IPR006048. A-amylase_b_C.
IPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view ]
PANTHERi PTHR10357. PTHR10357. 1 hit.
Pfami PF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
[Graphical view ]
PRINTSi PR00110. ALPHAAMYLASE.
SMARTi SM00642. Aamy. 1 hit.
SM00632. Aamy_C. 1 hit.
[Graphical view ]
SUPFAMi SSF51445. SSF51445. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of Gardnerella vaginalis HMP9231."
    Durkin A.S., Kim M.K., Hostetler J., Torralba M., Gillis M., Methe B., Sutton G., Nelson K.E.
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HMP9231.

Entry informationi

Entry nameiF6A381_GARVH
AccessioniPrimary (citable) accession number: F6A381
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: July 9, 2014
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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