Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

F6A381 (F6A381_GARVH) Unreviewed, UniProtKB/TrEMBL

Last modified December 11, 2013. Version 15. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
Gene names
Ordered Locus Names:HMPREF9231_0972 EMBL AEF31021.1
OrganismGardnerella vaginalis (strain HMP9231) [Complete proteome] [HAMAP] EMBL AEF31021.1
Taxonomic identifier1009464 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeBifidobacterialesBifidobacteriaceaeGardnerella

Protein attributes

Sequence length560 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the glycosyl hydrolase 13 family. RuleBase RU003615

Ontologies

Keywords
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular_functioncatalytic activity

Inferred from electronic annotation. Source: InterPro

cation binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
F6A381 [UniParc].

Last modified July 27, 2011. Version 1.
Checksum: 942D9C9961ED437D

FASTA56061,894
        10         20         30         40         50         60 
MIHGIEVFTS FNKKALVKLK FVLARVAAIT SCVAMILAGA VVASSPAIAD EGAKSSQKTT 

        70         80         90        100        110        120 
QKGVIVTAFQ QNWRSIAKEC KKTYGPEGVK YVQVSPPQDH IKGDQWWTSY QPVSYKLNSK 

       130        140        150        160        170        180 
LGTEDEFKKM ITTCKASGIG IIADAVINHT TGFANKDTVG VGGSKYDAAN QSFPDAGYTK 

       190        200        210        220        230        240 
DDFHKSTENI NTYRKAEIVW THRLVGLLDL DTSNPHVQKT LGEYFAHMLK LGVDGFRVDA 

       250        260        270        280        290        300 
AKHMSPQDVK GIKDAAAEAA GTTPDKIWWM QETIGFSEQD PRIQPDQYLQ TGEVNEFEYS 

       310        320        330        340        350        360 
YRLRNYFYGS IENLKHITDK LIPSKKAAIF VTNWDTERDN ASRVLTYKDG KKYELANTFM 

       370        380        390        400        410        420 
LAYPYGTPNV FSGYEFTKRD EGAPGATQTS IPDVSCAKDS KWQCTQRLTS IRGMIGFYNA 

       430        440        450        460        470        480 
VRGTKVTNWQ DDDDNNVAFS RGNKGFLAIN NTEEPQKVSY KTDLPDGEYC NVYESKDCTK 

       490        500        510        520        530        540 
TVSVSGGKVK TTVDAESAVA LHVNAVKSLG NARARNVTIF ICVFVASICT FVVNRRFVEK 

       550        560 
SKKLAKGNSD GVKTGETKGK 

« Hide

References

[1]"Complete sequence of Gardnerella vaginalis HMP9231."
Durkin A.S., Kim M.K., Hostetler J., Torralba M., Gillis M., Methe B., Sutton G., Nelson K.E.
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: HMP9231.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002725 Genomic DNA. Translation: AEF31021.1.
RefSeqYP_005838300.1. NC_017456.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEF31021; AEF31021; HMPREF9231_0972.
GeneID12445077.
KEGGgvh:HMPREF9231_0972.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01176.
OrthoDBEOG66TG1T.

Enzyme and pathway databases

BioCycGVAG1009464:GLDL-966-MONOMER.

Family and domain databases

Gene3D2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProIPR006048. A-amylase_b_C.
IPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
[Graphical view]
PRINTSPR00110. ALPHAAMYLASE.
SMARTSM00642. Aamy. 1 hit.
SM00632. Aamy_C. 1 hit.
[Graphical view]
SUPFAMSSF51445. SSF51445. 1 hit.
ProtoNetSearch...

Entry information

Entry nameF6A381_GARVH
AccessionPrimary (citable) accession number: F6A381
Entry history
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: December 11, 2013
This is version 15 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)