Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

F6A0K1 (F6A0K1_GARVH) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 17. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
Gene names
Ordered Locus Names:HMPREF9231_0063 EMBL AEF32073.1
OrganismGardnerella vaginalis (strain HMP9231) [Complete proteome] [HAMAP] EMBL AEF32073.1
Taxonomic identifier1009464 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeBifidobacterialesBifidobacteriaceaeGardnerella

Protein attributes

Sequence length907 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Technical termComplete proteome
Gene Ontology (GO)
   Molecular_functionexo-alpha-sialidase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
F6A0K1 [UniParc].

Last modified July 27, 2011. Version 1.
Checksum: 51DA0823AB8C38E9

FASTA90799,482
        10         20         30         40         50         60 
MERRSTKTTS LIEDIADIKG SEHTRFNHAT IKITPSSEIK KYSENESGIN RKDKNEEINQ 

        70         80         90        100        110        120 
NEGIIGFKFV ANSDCDLLDI KPAQKSQATA QQEHTTPIIK ISIKEDAPLL SAQNLLEDSA 

       130        140        150        160        170        180 
DANGAKEIAL QMEDALGACD GREHDFAITY GSFGSRFYLD GYQCFASATN LGPQRVSEKA 

       190        200        210        220        230        240 
AEVCAAQAES SQIYDFYYSN HLPNPEEIAN SSTQAQPDIW FAGPTICARD IKRVSCKSSG 

       250        260        270        280        290        300 
TLHIQFRLRG PGQHGVLFAA GTAGTKTNLE SSEKISVYAG PEGIKITLID YETCVKSVIE 

       310        320        330        340        350        360 
AAASVDDGEW HDLIIRANRG ATDIYVDGYS QSHNIGQFWF ANIPELNAVS IGEDLRGVRL 

       370        380        390        400        410        420 
MGEARIGGIY FSALTEGQIQ RISRAKPLVT TALFDTGYAG SRSYRIPSLV KTRMGTLIAG 

       430        440        450        460        470        480 
ADQRTSVSND APNHINFVIR RSTDGGKTWG PLQTVINMPG KNLGKLGASA IDSCPILDPA 

       490        500        510        520        530        540 
GKSERINVLI DINPGGIGLT NCKTAVGVDA CGRIKLIDRL GGNYAAAMNG SAAVKLPCDS 

       550        560        570        580        590        600 
SEKECATKWL VFPDGSIKNC DSHNDLRNNS HSNQTCDSST WNIWKSQEIA SESQPLFAEK 

       610        620        630        640        650        660 
TCYIAQIYSD DDGKTWSTPR LIDHMVKEPW MSFAGVCPGN GIVIRQSEKH YGRILVPFYC 

       670        680        690        700        710        720 
SGQSKSHYSS GALISDDGGK TWNRGKMINE GRLINGKIVD PVTMQDDDAT SSETVFVERK 

       730        740        750        760        770        780 
NGDILAFFRN QNRSGCVGKA ISHDCGETWS ELIFDTSLPE IFSQPSATCF NSENADNADC 

       790        800        810        820        830        840 
IAFANASQMM PYRGRGVVRF SYDGGKTWAK NVCINPLHHV YQCLSSSNKR TLQLLWERET 

       850        860        870        880        890        900 
TGIYITAIDS NLWKQDNLQI DFKSNAKSLN NTDLDCIKNK INTSEKMKDL EEGSLTRTER 


SQHGRDI 

« Hide

References

[1]"Complete sequence of Gardnerella vaginalis HMP9231."
Durkin A.S., Kim M.K., Hostetler J., Torralba M., Gillis M., Methe B., Sutton G., Nelson K.E.
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: HMP9231.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002725 Genomic DNA. Translation: AEF32073.1.
RefSeqYP_005837447.1. NC_017456.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEF32073; AEF32073; HMPREF9231_0063.
GeneID12444174.
KEGGgvh:HMPREF9231_0063.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01186.
OrthoDBEOG61CM2G.

Enzyme and pathway databases

BioCycGVAG1009464:GLDL-63-MONOMER.

Family and domain databases

Gene3D2.120.10.10. 2 hits.
2.60.120.200. 1 hit.
InterProIPR008985. ConA-like_lec_gl_sf.
IPR013320. ConA-like_subgrp.
IPR026856. Sialidase_fam.
IPR011040. Sialidases.
[Graphical view]
PANTHERPTHR10628. PTHR10628. 1 hit.
SUPFAMSSF49899. SSF49899. 1 hit.
SSF50939. SSF50939. 2 hits.
ProtoNetSearch...

Entry information

Entry nameF6A0K1_GARVH
AccessionPrimary (citable) accession number: F6A0K1
Entry history
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: April 16, 2014
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)