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Protein
Submitted name:

DNA ligase

Gene

ambt_14835

Organism
Alteromonas sp. (strain SN2)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciASP715451:GHV1-2983-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:ambt_14835Imported
OrganismiAlteromonas sp. (strain SN2)Imported
Taxonomic identifieri715451 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesAlteromonadaceaeAlteromonas
ProteomesiUP000000683: Chromosome

Structurei

3D structure databases

ProteinModelPortaliF5ZEK7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK10747.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.

Sequencei

Sequence statusi: Complete.

F5ZEK7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNIKYVISIL LLAISQPTVS FATPVATPVA TPVTYLTSDT TEPMSDFAKP
60 70 80 90 100
ISDAAKPMAN VAKPLFSPIK PVTEQGVMPI QLAATYNKSD YINIAEYLVS
110 120 130 140 150
EKLDGVRARW TGTQLLTRNG NKIHAPEWFT KNWPDVALDG ELWTQRSSFE
160 170 180 190 200
AIASIVLSHT PDERWRTVKM MLFDMPVSHV PFATRLSTME ALVKQANSNS
210 220 230 240 250
LTTIPQFTLD SQRLLEAKID EVTAKGGEGL MLHHKAAFYQ DGRSNQLLKA
260 270 280 290 300
KRFNDAEAKV VGYVKGKGKF AGMMGSLMVE TPEGVQFKIG TGFSMKQRRY
310 320 330
PPPMNSWITF KYFGVTKKGI PRFASFRHVR PDKDLPDL
Length:338
Mass (Da):37,693
Last modified:July 27, 2011 - v1
Checksum:i31E66CCE029A821D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002339 Genomic DNA. Translation: AEF04477.1.
RefSeqiWP_013785402.1. NC_015554.1.
YP_004468279.1. NC_015554.1.

Genome annotation databases

EnsemblBacteriaiAEF04477; AEF04477; ambt_14835.
GeneIDi10651426.
KEGGialt:ambt_14835.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002339 Genomic DNA. Translation: AEF04477.1.
RefSeqiWP_013785402.1. NC_015554.1.
YP_004468279.1. NC_015554.1.

3D structure databases

ProteinModelPortaliF5ZEK7.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEF04477; AEF04477; ambt_14835.
GeneIDi10651426.
KEGGialt:ambt_14835.

Phylogenomic databases

KOiK10747.

Enzyme and pathway databases

BioCyciASP715451:GHV1-2983-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of the polycyclic aromatic hydrocarbon-degrading bacterium Alteromonas sp. strain SN2."
    Jin H.M., Jeong H., Moon E.J., Math R.K., Lee K., Kim H.J., Jeon C.O., Oh T.K., Kim J.F.
    J. Bacteriol. 193:4292-4293(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: SN2Imported.

Entry informationi

Entry nameiF5ZEK7_ALTSS
AccessioniPrimary (citable) accession number: F5ZEK7
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: March 4, 2015
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.