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F5ZAV3 (F5ZAV3_ALTSS) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 15. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Protein-export membrane protein SecF HAMAP-Rule MF_01464
Gene names
Name:secF HAMAP-Rule MF_01464
Ordered Locus Names:ambt_03815 EMBL AEF02313.1
OrganismAlteromonas sp. (strain SN2) [Complete proteome] [HAMAP]
Taxonomic identifier715451 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Alteromonadaceae › Alteromonas

Protein attributes

Sequence length313 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA By similarity. HAMAP-Rule MF_01464

Subunit structure

Forms a complex with SecD. Part of the essential Sec protein translocation apparatus which comprises SecA, SecYEG and auxiliary proteins SecDF-YajC and YidC By similarity. HAMAP-Rule MF_01464

Subcellular location

Cell inner membrane; Multi-pass membrane protein By similarity HAMAP-Rule MF_01464.

Sequence similarities

Belongs to the SecD/SecF family. SecF subfamily. HAMAP-Rule MF_01464

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Transmembrane17 – 3721Helical; By similarity HAMAP-Rule MF_01464
Transmembrane133 – 15321Helical; By similarity HAMAP-Rule MF_01464
Transmembrane178 – 19821Helical; By similarity HAMAP-Rule MF_01464
Transmembrane235 – 25521Helical; By similarity HAMAP-Rule MF_01464
Transmembrane266 – 28823Helical; By similarity HAMAP-Rule MF_01464

Sequences

Sequence LengthMass (Da)Tools
F5ZAV3 [UniParc].

Last modified July 27, 2011. Version 1.
Checksum: D65F89B1AA9F979A

FASTA31333,833
        10         20         30         40         50         60 
MQLLKLSETI NFMRLRVPAM VLSTILILGS FVSLGVNSLN WGLDFTGGTL IEVGYEDSAN 

        70         80         90        100        110        120 
LESIRALLNN AEFEDAIVQN FGSSQEVLIR IAPRDGVKAA TIGEQVLAAL RADGTTVDMR 

       130        140        150        160        170        180 
RIEFVGPNVG EELTEQGGLA MLVALICILV YVAMRFEWRF ALGSVSALAH DVILTLGLFS 

       190        200        210        220        230        240 
ILQIEFDLTV LAAVLAVIGY SLNDTIVVSD RIRENFRKIR KGEPIDIINI SLTQTLNRTI 

       250        260        270        280        290        300 
ITSLTTVLVL VALFYKGGAL IHGFATALLF GVVVGTYSSV YIASSVALAL GISKEDLMPP 

       310 
QVEKEGADLD PMP

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References

[1]"Complete genome sequence of the polycyclic aromatic hydrocarbon-degrading bacterium Alteromonas sp. strain SN2."
Jin H.M., Jeong H., Moon E.J., Math R.K., Lee K., Kim H.J., Jeon C.O., Oh T.K., Kim J.F.
J. Bacteriol. 193:4292-4293(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: SN2 EMBL AEF02313.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP002339 Genomic DNA. Translation: AEF02313.1.
RefSeqYP_004466115.1. NC_015554.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEF02313; AEF02313; ambt_03815.
GeneID10654591.
KEGGalt:ambt_03815.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK03074.

Enzyme and pathway databases

BioCycASP715451:GHV1-766-MONOMER.

Family and domain databases

HAMAPMF_01464_B. SecF_B.
InterProIPR022813. SecD/SecF.
IPR022645. SecD/SecF_bac.
IPR022646. SecD/SecF_CS.
IPR005665. SecF_bac.
[Graphical view]
PfamPF07549. Sec_GG. 1 hit.
PF02355. SecD_SecF. 1 hit.
[Graphical view]
PRINTSPR01755. SECFTRNLCASE.
TIGRFAMsTIGR00916. 2A0604s01. 1 hit.
TIGR00966. 3a0501s07. 1 hit.
ProtoNetSearch...

Entry information

Entry nameF5ZAV3_ALTSS
AccessionPrimary (citable) accession number: F5ZAV3
Entry history
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: April 3, 2013
This is version 15 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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