F5Z778 (F5Z778_ALTSS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Choline dehydrogenase RuleBase RU003969
EC=1.1.99.1 RuleBase RU003969

Gene names

Ordered Locus Names:

ambt_06940 EMBL AEF02921.1

Organism

Alteromonas sp. (strain SN2) [Complete proteome] [HAMAP]

Taxonomic identifier

715451 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Alteromonadaceae › Alteromonas

Protein attributes

Sequence length	556 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine By similarity. SAAS SAAS000172
Catalytic activity	Choline + acceptor = betaine aldehyde + reduced acceptor. RuleBase RU003969 SAAS SAAS000172
Cofactor	FAD By similarity. SAAS SAAS000172
Pathway	Amine and polyamine biosynthesis; betaine biosynthesis via choline pathway; betaine aldehyde from choline (cytochrome c reductase route): step 1/1. RuleBase RU003969 SAAS SAAS000172
Sequence similarities	Belongs to the GMC oxidoreductase family. RuleBase RU003968

Ontologies

Keywords
Ligand	FAD RuleBase RU003968 SAAS SAAS011533 Flavoprotein SAAS SAAS011533 RuleBase RU003968
Molecular function	Oxidoreductase SAAS SAAS000172 EMBL AEF02921.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	glycine betaine biosynthetic process from choline Inferred from electronic annotation. Source: UniProtKB-UniPathway
Molecular_function	choline dehydrogenase activity Inferred from electronic annotation. Source: EC flavin adenine dinucleotide binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F5Z778 [UniParc]. Last modified July 27, 2011. Version 1. Checksum: FE454CC1D0FF49A9	FASTA	556	60,849
	10 20 30 40 50 60 MSKQAYDYII VGAGSAGCVL ANRLSEDANN NVLLLETGGS DKSIFIKMPT ALSIPMNTDK 70 80 90 100 110 120 YAWQFHTEEE PFLDNRKMHC PRGKVLGGSS SINGMVYVRG HAKDFDEWEE HGAQGWNYQA 130 140 150 160 170 180 CLPYFQKAES FYLGNDDYRG GKGPLGVNNG NEMANPLYTA FIEAGKEAGY ATTADYNAAQ 190 200 210 220 230 240 QEGFGPMHMT VKDGVRSSAS REYLDPVKSR KNLTLVTGAL AEKVILEGKK AVGVQYSVNG 250 260 270 280 290 300 KRVTAKANKE VVLSAGSIGS PHLLQLSGIG DSETLKAAGV DVKHHLPGVG QNLQDHLEFY 310 320 330 340 350 360 FQYKCKQPIT LNGKLGLISK GLIGARWMFT RKGLGATNHF ESCAFIRSKP GVEWPDIQYH 370 380 390 400 410 420 FLPAAMRYDG LSAFDGHGFQ VHVGHNKPKS RGAVTIKTAN PTDAPKIQFN YLQHQDDIEG 430 440 450 460 470 480 FRACVRLTRE IIEQSAFDDY REDEIQPGKH IQTDEEIDAF VRQAVESAYH PSCSCKMGED 490 500 510 520 530 540 AMAVVNSNTQ VHGIESLRVV DSSIFPTVPN GNLNAPTIMV AEKAADLILG KPALAHSPVN 550 VATSNNWETV QRNSTI

References

[1]

"Complete genome sequence of the polycyclic aromatic hydrocarbon-degrading bacterium Alteromonas sp. strain SN2." Jin H.M., Jeong H., Moon E.J., Math R.K., Lee K., Kim H.J., Jeon C.O., Oh T.K., Kim J.F. J. Bacteriol. 193:4292-4293(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: SN2 EMBL AEF02921.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002339 Genomic DNA. Translation: AEF02921.1.
RefSeq	YP_004466723.1. NC_015554.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEF02921; AEF02921; ambt_06940.
GeneID	10654551.
KEGG	alt:ambt_06940.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K00108.
Enzyme and pathway databases
BioCyc	ASP715451:GHV1-1386-MONOMER.
UniPathway	UPA00529; UER00385.
Family and domain databases
InterPro	IPR011533. Choline_dehydrogenase. IPR012132. GMC_OxRdtase. IPR000172. GMC_OxRdtase_N. IPR007867. GMC_OxRtase_C. [Graphical view]
Pfam	PF05199. GMC_oxred_C. 1 hit. PF00732. GMC_oxred_N. 1 hit. [Graphical view]
PIRSF	PIRSF000137. Alcohol_oxidase. 1 hit.
TIGRFAMs	TIGR01810. betA. 1 hit.
PROSITE	PS00623. GMC_OXRED_1. 1 hit. PS00624. GMC_OXRED_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

F5Z778_ALTSS

Accession

Primary (citable) accession number: F5Z778

Entry history

Integrated into UniProtKB/TrEMBL:	July 27, 2011
Last sequence update:	July 27, 2011
Last modified:	April 3, 2013
This is version 12 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)