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F5Z778 (F5Z778_ALTSS) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 15. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Choline dehydrogenase RuleBase RU003969

EC=1.1.99.1 RuleBase RU003969
Gene names
Ordered Locus Names:ambt_06940 EMBL AEF02921.1
OrganismAlteromonas sp. (strain SN2) [Complete proteome] [HAMAP] EMBL AEF02921.1
Taxonomic identifier715451 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesAlteromonadaceaeAlteromonas

Protein attributes

Sequence length556 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate By similarity. SAAS SAAS012132

Catalytic activity

Betaine aldehyde + NAD+ + H2O = betaine + NADH. SAAS SAAS012132

Choline + acceptor = betaine aldehyde + reduced acceptor. SAAS SAAS012132

Cofactor

FAD By similarity. SAAS SAAS012132

Pathway

Amine and polyamine biosynthesis; betaine biosynthesis via choline pathway; betaine aldehyde from choline (cytochrome c reductase route): step 1/1. SAAS SAAS012132

Sequence similarities

Belongs to the GMC oxidoreductase family. RuleBase RU003968

Sequences

Sequence LengthMass (Da)Tools
F5Z778 [UniParc].

Last modified July 27, 2011. Version 1.
Checksum: FE454CC1D0FF49A9

FASTA55660,849
        10         20         30         40         50         60 
MSKQAYDYII VGAGSAGCVL ANRLSEDANN NVLLLETGGS DKSIFIKMPT ALSIPMNTDK 

        70         80         90        100        110        120 
YAWQFHTEEE PFLDNRKMHC PRGKVLGGSS SINGMVYVRG HAKDFDEWEE HGAQGWNYQA 

       130        140        150        160        170        180 
CLPYFQKAES FYLGNDDYRG GKGPLGVNNG NEMANPLYTA FIEAGKEAGY ATTADYNAAQ 

       190        200        210        220        230        240 
QEGFGPMHMT VKDGVRSSAS REYLDPVKSR KNLTLVTGAL AEKVILEGKK AVGVQYSVNG 

       250        260        270        280        290        300 
KRVTAKANKE VVLSAGSIGS PHLLQLSGIG DSETLKAAGV DVKHHLPGVG QNLQDHLEFY 

       310        320        330        340        350        360 
FQYKCKQPIT LNGKLGLISK GLIGARWMFT RKGLGATNHF ESCAFIRSKP GVEWPDIQYH 

       370        380        390        400        410        420 
FLPAAMRYDG LSAFDGHGFQ VHVGHNKPKS RGAVTIKTAN PTDAPKIQFN YLQHQDDIEG 

       430        440        450        460        470        480 
FRACVRLTRE IIEQSAFDDY REDEIQPGKH IQTDEEIDAF VRQAVESAYH PSCSCKMGED 

       490        500        510        520        530        540 
AMAVVNSNTQ VHGIESLRVV DSSIFPTVPN GNLNAPTIMV AEKAADLILG KPALAHSPVN 

       550 
VATSNNWETV QRNSTI 

« Hide

References

[1]"Complete genome sequence of the polycyclic aromatic hydrocarbon-degrading bacterium Alteromonas sp. strain SN2."
Jin H.M., Jeong H., Moon E.J., Math R.K., Lee K., Kim H.J., Jeon C.O., Oh T.K., Kim J.F.
J. Bacteriol. 193:4292-4293(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: SN2 EMBL AEF02921.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002339 Genomic DNA. Translation: AEF02921.1.
RefSeqYP_004466723.1. NC_015554.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEF02921; AEF02921; ambt_06940.
GeneID10654551.
KEGGalt:ambt_06940.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK00108.

Enzyme and pathway databases

BioCycASP715451:GHV1-1389-MONOMER.
UniPathwayUPA00529; UER00385.

Family and domain databases

InterProIPR011533. Choline_dehydrogenase.
IPR012132. GMC_OxRdtase.
IPR000172. GMC_OxRdtase_N.
IPR007867. GMC_OxRtase_C.
[Graphical view]
PfamPF05199. GMC_oxred_C. 1 hit.
PF00732. GMC_oxred_N. 1 hit.
[Graphical view]
PIRSFPIRSF000137. Alcohol_oxidase. 1 hit.
TIGRFAMsTIGR01810. betA. 1 hit.
PROSITEPS00623. GMC_OXRED_1. 1 hit.
PS00624. GMC_OXRED_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF5Z778_ALTSS
AccessionPrimary (citable) accession number: F5Z778
Entry history
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: November 13, 2013
This is version 15 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)