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F5Z6D1

- F5Z6D1_ALTSS

UniProt

F5Z6D1 - F5Z6D1_ALTSS

Protein
Submitted name:

DNA ligase

Gene

ambt_19765

Organism
Alteromonas sp. (strain SN2)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 15 (01 Oct 2014)
      Sequence version 1 (27 Jul 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciASP715451:GHV1-3959-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligaseImported
    Gene namesi
    Ordered Locus Names:ambt_19765Imported
    OrganismiAlteromonas sp. (strain SN2)Imported
    Taxonomic identifieri715451 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesAlteromonadaceaeAlteromonas
    ProteomesiUP000000683: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliF5Z6D1.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F5Z6D1-1 [UniParc]FASTAAdd to Basket

    « Hide

    MQAFSDLLEQ LYYTAGTKAK AQLILHYLAT TPDPDRGWAI AAMAGTLKFD    50
    FFKRNTVKKL ITERVDPELF AMSYDYVGEV SETVAHLWPE FTPDKALPSL 100
    SEVVDTFANI SKPKVAVTLA NYLTIMTPSQ RWALLKLGTR GLRIGVSARS 150
    IKQILAEYGN KDITEIEKLW HGVAPPYTDL LEWLEGNGSK PDISNAVTFH 200
    PVMLSHPIAQ DDVDDFAPEQ WQIEHKFDGI RVQLVCNTTK EEPEKALFSR 250
    TGDDISHAFP DLLDSVSGNM VLDGELLVMH NQEVDTFNAL QQRLNKKKPT 300
    AALMATNPAG LIVYDALVLD GKQLTDYPLT TRREALETWF DKNGIQEHDN 350
    DSRLHLSECL SADSPKGLRT LHKNVCKNRA VEGLMIKRLS SPYVPGRPKG 400
    QWYKWKRDPL VVDAVMMYAQ RGHGKRSSFY SDYTFGAWQD EQLLPIGNAY 450
    SGFTDEELKK LDNWVRRNAI GRFGPVREVK KELVLEVAFD AVHPSNRHKS 500
    GVALRFPRIH RIRWDKPANE ADTLINVKAL IES 533
    Length:533
    Mass (Da):60,260
    Last modified:July 27, 2011 - v1
    Checksum:iB56A45B5561C28C5
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002339 Genomic DNA. Translation: AEF05444.1.
    RefSeqiWP_013786354.1. NC_015554.1.
    YP_004469246.1. NC_015554.1.

    Genome annotation databases

    EnsemblBacteriaiAEF05444; AEF05444; ambt_19765.
    GeneIDi10650854.
    KEGGialt:ambt_19765.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002339 Genomic DNA. Translation: AEF05444.1 .
    RefSeqi WP_013786354.1. NC_015554.1.
    YP_004469246.1. NC_015554.1.

    3D structure databases

    ProteinModelPortali F5Z6D1.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEF05444 ; AEF05444 ; ambt_19765 .
    GeneIDi 10650854.
    KEGGi alt:ambt_19765.

    Phylogenomic databases

    KOi K01971.

    Enzyme and pathway databases

    BioCyci ASP715451:GHV1-3959-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of the polycyclic aromatic hydrocarbon-degrading bacterium Alteromonas sp. strain SN2."
      Jin H.M., Jeong H., Moon E.J., Math R.K., Lee K., Kim H.J., Jeon C.O., Oh T.K., Kim J.F.
      J. Bacteriol. 193:4292-4293(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: SN2Imported.

    Entry informationi

    Entry nameiF5Z6D1_ALTSS
    AccessioniPrimary (citable) accession number: F5Z6D1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 27, 2011
    Last sequence update: July 27, 2011
    Last modified: October 1, 2014
    This is version 15 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3