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F5Z6D1

- F5Z6D1_ALTSS

UniProt

F5Z6D1 - F5Z6D1_ALTSS

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Protein
Submitted name: DNA ligase
Gene
ambt_19765
Organism
Alteromonas sp. (strain SN2)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciASP715451:GHV1-3959-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligaseImported
Gene namesi
Ordered Locus Names:ambt_19765Imported
OrganismiAlteromonas sp. (strain SN2)Imported
Taxonomic identifieri715451 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesAlteromonadaceaeAlteromonas
ProteomesiUP000000683: Chromosome

Structurei

3D structure databases

ProteinModelPortaliF5Z6D1.

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F5Z6D1-1 [UniParc]FASTAAdd to Basket

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MQAFSDLLEQ LYYTAGTKAK AQLILHYLAT TPDPDRGWAI AAMAGTLKFD    50
FFKRNTVKKL ITERVDPELF AMSYDYVGEV SETVAHLWPE FTPDKALPSL 100
SEVVDTFANI SKPKVAVTLA NYLTIMTPSQ RWALLKLGTR GLRIGVSARS 150
IKQILAEYGN KDITEIEKLW HGVAPPYTDL LEWLEGNGSK PDISNAVTFH 200
PVMLSHPIAQ DDVDDFAPEQ WQIEHKFDGI RVQLVCNTTK EEPEKALFSR 250
TGDDISHAFP DLLDSVSGNM VLDGELLVMH NQEVDTFNAL QQRLNKKKPT 300
AALMATNPAG LIVYDALVLD GKQLTDYPLT TRREALETWF DKNGIQEHDN 350
DSRLHLSECL SADSPKGLRT LHKNVCKNRA VEGLMIKRLS SPYVPGRPKG 400
QWYKWKRDPL VVDAVMMYAQ RGHGKRSSFY SDYTFGAWQD EQLLPIGNAY 450
SGFTDEELKK LDNWVRRNAI GRFGPVREVK KELVLEVAFD AVHPSNRHKS 500
GVALRFPRIH RIRWDKPANE ADTLINVKAL IES 533
Length:533
Mass (Da):60,260
Last modified:July 27, 2011 - v1
Checksum:iB56A45B5561C28C5
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002339 Genomic DNA. Translation: AEF05444.1.
RefSeqiWP_013786354.1. NC_015554.1.
YP_004469246.1. NC_015554.1.

Genome annotation databases

EnsemblBacteriaiAEF05444; AEF05444; ambt_19765.
GeneIDi10650854.
KEGGialt:ambt_19765.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002339 Genomic DNA. Translation: AEF05444.1 .
RefSeqi WP_013786354.1. NC_015554.1.
YP_004469246.1. NC_015554.1.

3D structure databases

ProteinModelPortali F5Z6D1.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AEF05444 ; AEF05444 ; ambt_19765 .
GeneIDi 10650854.
KEGGi alt:ambt_19765.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci ASP715451:GHV1-3959-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of the polycyclic aromatic hydrocarbon-degrading bacterium Alteromonas sp. strain SN2."
    Jin H.M., Jeong H., Moon E.J., Math R.K., Lee K., Kim H.J., Jeon C.O., Oh T.K., Kim J.F.
    J. Bacteriol. 193:4292-4293(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: SN2Imported.

Entry informationi

Entry nameiF5Z6D1_ALTSS
AccessioniPrimary (citable) accession number: F5Z6D1
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: September 3, 2014
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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