Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

F5Z6D1 (F5Z6D1_ALTSS) Unreviewed, UniProtKB/TrEMBL

Last modified October 16, 2013. Version 13. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
Gene names
Ordered Locus Names:ambt_19765 EMBL AEF05444.1
OrganismAlteromonas sp. (strain SN2) [Complete proteome] [HAMAP] EMBL AEF05444.1
Taxonomic identifier715451 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesAlteromonadaceaeAlteromonas

Protein attributes

Sequence length533 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
F5Z6D1 [UniParc].

Last modified July 27, 2011. Version 1.
Checksum: B56A45B5561C28C5

FASTA53360,260
        10         20         30         40         50         60 
MQAFSDLLEQ LYYTAGTKAK AQLILHYLAT TPDPDRGWAI AAMAGTLKFD FFKRNTVKKL 

        70         80         90        100        110        120 
ITERVDPELF AMSYDYVGEV SETVAHLWPE FTPDKALPSL SEVVDTFANI SKPKVAVTLA 

       130        140        150        160        170        180 
NYLTIMTPSQ RWALLKLGTR GLRIGVSARS IKQILAEYGN KDITEIEKLW HGVAPPYTDL 

       190        200        210        220        230        240 
LEWLEGNGSK PDISNAVTFH PVMLSHPIAQ DDVDDFAPEQ WQIEHKFDGI RVQLVCNTTK 

       250        260        270        280        290        300 
EEPEKALFSR TGDDISHAFP DLLDSVSGNM VLDGELLVMH NQEVDTFNAL QQRLNKKKPT 

       310        320        330        340        350        360 
AALMATNPAG LIVYDALVLD GKQLTDYPLT TRREALETWF DKNGIQEHDN DSRLHLSECL 

       370        380        390        400        410        420 
SADSPKGLRT LHKNVCKNRA VEGLMIKRLS SPYVPGRPKG QWYKWKRDPL VVDAVMMYAQ 

       430        440        450        460        470        480 
RGHGKRSSFY SDYTFGAWQD EQLLPIGNAY SGFTDEELKK LDNWVRRNAI GRFGPVREVK 

       490        500        510        520        530 
KELVLEVAFD AVHPSNRHKS GVALRFPRIH RIRWDKPANE ADTLINVKAL IES 

« Hide

References

[1]"Complete genome sequence of the polycyclic aromatic hydrocarbon-degrading bacterium Alteromonas sp. strain SN2."
Jin H.M., Jeong H., Moon E.J., Math R.K., Lee K., Kim H.J., Jeon C.O., Oh T.K., Kim J.F.
J. Bacteriol. 193:4292-4293(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: SN2 EMBL AEF05444.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002339 Genomic DNA. Translation: AEF05444.1.
RefSeqYP_004469246.1. NC_015554.1.

3D structure databases

ProteinModelPortalF5Z6D1.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEF05444; AEF05444; ambt_19765.
GeneID10650854.
KEGGalt:ambt_19765.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycASP715451:GHV1-3959-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR04120. DNA_lig_bact. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF5Z6D1_ALTSS
AccessionPrimary (citable) accession number: F5Z6D1
Entry history
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: October 16, 2013
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)