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F5Z238 (F5Z238_MYCSD) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 11. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:JDM601_3038 EMBL AEF37038.1
OrganismMycobacterium sp. (strain JDM601) [Complete proteome] [HAMAP] EMBL AEF37038.1
Taxonomic identifier875328 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeMycobacterium

Protein attributes

Sequence length301 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL AEF37038.1
   Technical termComplete proteome
Gene Ontology (GO)
   Molecular_functionligase activity

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
F5Z238 [UniParc].

Last modified July 27, 2011. Version 1.
Checksum: C6E405E53C9814BD

FASTA30133,225
        10         20         30         40         50         60 
MKPNVSITHP DRVLFPASDT HEAITKGDLI DYYAELAPVM VPHLDGRPLT LTRFPGGIDE 

        70         80         90        100        110        120 
EGFIQQNFAA ALPDWMDRVE VARKSGEGTV VHPVVTREEA LVWAANQDCI TLHSWSSRRP 

       130        140        150        160        170        180 
HLDTPDRLIF DLDPADDDFA VVRATARSVA DVVQELGMTA YVQTTGSRGL HIVAPLRGDA 

       190        200        210        220        230        240 
DFDTAREFAS TIAGLVVDDD PLHRTREIRK AGRGGRVYVD VMRNAYGQTG VAPYAVRARA 

       250        260        270        280        290        300 
GAPVALPLEW DELDIPGIRP DGWTLRDVPK RMCERGDPWA DMYRQACALA PLRDRLAKLG 


A 

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References

[1]"Complete genome sequence of a novel clinical isolate, the nontuberculous Mycobacterium strain JDM601."
Zhang Z.Y., Sun Z.Q., Wang Z.L., Wen Z.L., Sun Q.W., Zhu Z.Q., Song Y.Z., Zhao J.W., Wang H.H., Zhang S.L., Guo X.K.
J. Bacteriol. 193:4300-4301(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: JDM601 EMBL AEF37038.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002329 Genomic DNA. Translation: AEF37038.1.
RefSeqYP_004524292.1. NC_015576.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEF37038; AEF37038; JDM601_3038.
GeneID10685071.
KEGGmjd:JDM601_3038.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycMSP875328:GHLX-3082-MONOMER.

Family and domain databases

InterProIPR014145. LigD_pol.
[Graphical view]
TIGRFAMsTIGR02778. ligD_pol. 1 hit.
ProtoNetSearch...

Entry information

Entry nameF5Z238_MYCSD
AccessionPrimary (citable) accession number: F5Z238
Entry history
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: April 16, 2014
This is version 11 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)