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Protein
Submitted name:

Putative DNA ligase-like protein

Gene

JDM601_3038

Organism
Mycobacterium sp. (strain JDM601)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciMSP875328:GHLX-3082-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative DNA ligase-like proteinImported
Gene namesi
Ordered Locus Names:JDM601_3038Imported
OrganismiMycobacterium sp. (strain JDM601)Imported
Taxonomic identifieri875328 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaCorynebacterialesMycobacteriaceaeMycobacterium
ProteomesiUP000009224 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi875328.JDM601_3038.

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

InterProiIPR014145. LigD_pol_dom.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.

Sequencei

Sequence statusi: Complete.

F5Z238-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKPNVSITHP DRVLFPASDT HEAITKGDLI DYYAELAPVM VPHLDGRPLT
60 70 80 90 100
LTRFPGGIDE EGFIQQNFAA ALPDWMDRVE VARKSGEGTV VHPVVTREEA
110 120 130 140 150
LVWAANQDCI TLHSWSSRRP HLDTPDRLIF DLDPADDDFA VVRATARSVA
160 170 180 190 200
DVVQELGMTA YVQTTGSRGL HIVAPLRGDA DFDTAREFAS TIAGLVVDDD
210 220 230 240 250
PLHRTREIRK AGRGGRVYVD VMRNAYGQTG VAPYAVRARA GAPVALPLEW
260 270 280 290 300
DELDIPGIRP DGWTLRDVPK RMCERGDPWA DMYRQACALA PLRDRLAKLG

A
Length:301
Mass (Da):33,225
Last modified:July 27, 2011 - v1
Checksum:iC6E405E53C9814BD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002329 Genomic DNA. Translation: AEF37038.1.
RefSeqiWP_013829967.1. NC_015576.1.
YP_004524292.1. NC_015576.1.

Genome annotation databases

EnsemblBacteriaiAEF37038; AEF37038; JDM601_3038.
KEGGimjd:JDM601_3038.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002329 Genomic DNA. Translation: AEF37038.1.
RefSeqiWP_013829967.1. NC_015576.1.
YP_004524292.1. NC_015576.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi875328.JDM601_3038.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEF37038; AEF37038; JDM601_3038.
KEGGimjd:JDM601_3038.

Phylogenomic databases

KOiK01971.

Enzyme and pathway databases

BioCyciMSP875328:GHLX-3082-MONOMER.

Family and domain databases

InterProiIPR014145. LigD_pol_dom.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete gnome sequence of a novel clinical isolate, the nontuberculous Mycobacterium strain JDM601."
    Zhang Z.Y., Sun Z.Q., Wang Z.L., Wen Z.L., Sun Q.W., Zhu Z.Q., Song Y.Z., Zhao J.W., Wang H.H., Zhang S.L., Guo X.K.
    J. Bacteriol. 193:4300-4301(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: JDM601Imported.

Entry informationi

Entry nameiF5Z238_MYCSD
AccessioniPrimary (citable) accession number: F5Z238
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: June 24, 2015
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.