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F5YXP1

- F5YXP1_MYCSD

UniProt

F5YXP1 - F5YXP1_MYCSD

Protein

Glutamate decarboxylase

Gene

gadB

Organism
Mycobacterium sp. (strain JDM601)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 15 (01 Oct 2014)
      Sequence version 1 (27 Jul 2011)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    L-glutamate = 4-aminobutanoate + CO2.UniRule annotation

    Cofactori

    Pyridoxal phosphate.UniRule annotation

    GO - Molecular functioni

    1. glutamate decarboxylase activity Source: InterPro
    2. pyridoxal phosphate binding Source: InterPro

    GO - Biological processi

    1. glutamate metabolic process Source: InterPro

    Keywords - Molecular functioni

    DecarboxylaseUniRule annotation, Lyase

    Keywords - Ligandi

    Pyridoxal phosphateUniRule annotation

    Enzyme and pathway databases

    BioCyciMSP875328:GHLX-3289-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Glutamate decarboxylaseUniRule annotation (EC:4.1.1.15UniRule annotation)
    Gene namesi
    Name:gadBImported
    Ordered Locus Names:JDM601_3245Imported
    OrganismiMycobacterium sp. (strain JDM601)Imported
    Taxonomic identifieri875328 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeMycobacterium
    ProteomesiUP000009224: Chromosome

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the group II decarboxylase family.UniRule annotation

    Phylogenomic databases

    KOiK01580.

    Family and domain databases

    Gene3Di3.40.640.10. 1 hit.
    InterProiIPR010107. Glutamate_decarboxylase.
    IPR002129. PyrdxlP-dep_de-COase.
    IPR015424. PyrdxlP-dep_Trfase.
    IPR015421. PyrdxlP-dep_Trfase_major_sub1.
    [Graphical view]
    PANTHERiPTHR11999:SF1. PTHR11999:SF1. 1 hit.
    PfamiPF00282. Pyridoxal_deC. 1 hit.
    [Graphical view]
    SUPFAMiSSF53383. SSF53383. 1 hit.
    TIGRFAMsiTIGR01788. Glu-decarb-GAD. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    F5YXP1-1 [UniParc]FASTAAdd to Basket

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    MTHSHPSVPA HTIAPAYTGR LFTSPVPALR MPDESMEPQA AYRFIHDELM    50
    LDGSSRLNLA TFVTTWMDPE ASALMAESFD KNMIDKDEYP ATAAIEQRCV 100
    SMVADLFHAE NLRDDDPASA IGVSTVGSSE AVMLGGLALK WRWRAKVGDW 150
    QGRTPNLVMG SNVQVVWEKF CRYFDVEPRY LPMAQGRYVI TPEQVVDAVD 200
    ENTIGVVAIL GTTYTGELEP VEAICAALDK LAAGGGPDVP VHVDAASGGF 250
    VVPFLHPDLK WDFRLPRVVS INVSGHKYGL TYPGIGFVVW RGADYLPEEL 300
    VFRVNYLGGD MPTFTLNFSR PGNQVVGQYY NFLRLGRSGY TEVMRTLSDT 350
    ARWLSHQLAD SEHFEVISDG SAIPVVSCRL AGKRGYTEFD VSHELRTFGW 400
    QVPAYTMPEG AEDVAVLRVV VREGLSADLA RALFDDTMKA VTALDRLKPG 450
    GHFDDQQHFS H 461
    Length:461
    Mass (Da):50,924
    Last modified:July 27, 2011 - v1
    Checksum:i04410B07E8FA6F35
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002329 Genomic DNA. Translation: AEF37245.1.
    RefSeqiWP_013830174.1. NC_015576.1.
    YP_004524499.1. NC_015576.1.

    Genome annotation databases

    EnsemblBacteriaiAEF37245; AEF37245; JDM601_3245.
    GeneIDi10685278.
    KEGGimjd:JDM601_3245.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002329 Genomic DNA. Translation: AEF37245.1 .
    RefSeqi WP_013830174.1. NC_015576.1.
    YP_004524499.1. NC_015576.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEF37245 ; AEF37245 ; JDM601_3245 .
    GeneIDi 10685278.
    KEGGi mjd:JDM601_3245.

    Phylogenomic databases

    KOi K01580.

    Enzyme and pathway databases

    BioCyci MSP875328:GHLX-3289-MONOMER.

    Family and domain databases

    Gene3Di 3.40.640.10. 1 hit.
    InterProi IPR010107. Glutamate_decarboxylase.
    IPR002129. PyrdxlP-dep_de-COase.
    IPR015424. PyrdxlP-dep_Trfase.
    IPR015421. PyrdxlP-dep_Trfase_major_sub1.
    [Graphical view ]
    PANTHERi PTHR11999:SF1. PTHR11999:SF1. 1 hit.
    Pfami PF00282. Pyridoxal_deC. 1 hit.
    [Graphical view ]
    SUPFAMi SSF53383. SSF53383. 1 hit.
    TIGRFAMsi TIGR01788. Glu-decarb-GAD. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Complete gnome sequence of a novel clinical isolate, the nontuberculous Mycobacterium strain JDM601."
      Zhang Z.Y., Sun Z.Q., Wang Z.L., Wen Z.L., Sun Q.W., Zhu Z.Q., Song Y.Z., Zhao J.W., Wang H.H., Zhang S.L., Guo X.K.
      J. Bacteriol. 193:4300-4301(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: JDM601Imported.

    Entry informationi

    Entry nameiF5YXP1_MYCSD
    AccessioniPrimary (citable) accession number: F5YXP1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 27, 2011
    Last sequence update: July 27, 2011
    Last modified: October 1, 2014
    This is version 15 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3