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F5YXP1

- F5YXP1_MYCSD

UniProt

F5YXP1 - F5YXP1_MYCSD

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Protein

Glutamate decarboxylase

Gene

gadB

Organism
Mycobacterium sp. (strain JDM601)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

L-glutamate = 4-aminobutanoate + CO2.UniRule annotation

Cofactori

Pyridoxal phosphate.UniRule annotation

GO - Molecular functioni

  1. glutamate decarboxylase activity Source: UniProtKB-EC
  2. pyridoxal phosphate binding Source: InterPro

GO - Biological processi

  1. glutamate metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

DecarboxylaseUniRule annotation, Lyase

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Enzyme and pathway databases

BioCyciMSP875328:GHLX-3289-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Glutamate decarboxylaseUniRule annotation (EC:4.1.1.15UniRule annotation)
Gene namesi
Name:gadBImported
Ordered Locus Names:JDM601_3245Imported
OrganismiMycobacterium sp. (strain JDM601)Imported
Taxonomic identifieri875328 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeMycobacterium
ProteomesiUP000009224: Chromosome

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

KOiK01580.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
InterProiIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PANTHERiPTHR11999:SF1. PTHR11999:SF1. 1 hit.
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR01788. Glu-decarb-GAD. 1 hit.

Sequencei

Sequence statusi: Complete.

F5YXP1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MTHSHPSVPA HTIAPAYTGR LFTSPVPALR MPDESMEPQA AYRFIHDELM
60 70 80 90 100
LDGSSRLNLA TFVTTWMDPE ASALMAESFD KNMIDKDEYP ATAAIEQRCV
110 120 130 140 150
SMVADLFHAE NLRDDDPASA IGVSTVGSSE AVMLGGLALK WRWRAKVGDW
160 170 180 190 200
QGRTPNLVMG SNVQVVWEKF CRYFDVEPRY LPMAQGRYVI TPEQVVDAVD
210 220 230 240 250
ENTIGVVAIL GTTYTGELEP VEAICAALDK LAAGGGPDVP VHVDAASGGF
260 270 280 290 300
VVPFLHPDLK WDFRLPRVVS INVSGHKYGL TYPGIGFVVW RGADYLPEEL
310 320 330 340 350
VFRVNYLGGD MPTFTLNFSR PGNQVVGQYY NFLRLGRSGY TEVMRTLSDT
360 370 380 390 400
ARWLSHQLAD SEHFEVISDG SAIPVVSCRL AGKRGYTEFD VSHELRTFGW
410 420 430 440 450
QVPAYTMPEG AEDVAVLRVV VREGLSADLA RALFDDTMKA VTALDRLKPG
460
GHFDDQQHFS H
Length:461
Mass (Da):50,924
Last modified:July 27, 2011 - v1
Checksum:i04410B07E8FA6F35
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002329 Genomic DNA. Translation: AEF37245.1.
RefSeqiWP_013830174.1. NC_015576.1.
YP_004524499.1. NC_015576.1.

Genome annotation databases

EnsemblBacteriaiAEF37245; AEF37245; JDM601_3245.
GeneIDi10685278.
KEGGimjd:JDM601_3245.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002329 Genomic DNA. Translation: AEF37245.1 .
RefSeqi WP_013830174.1. NC_015576.1.
YP_004524499.1. NC_015576.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AEF37245 ; AEF37245 ; JDM601_3245 .
GeneIDi 10685278.
KEGGi mjd:JDM601_3245.

Phylogenomic databases

KOi K01580.

Enzyme and pathway databases

BioCyci MSP875328:GHLX-3289-MONOMER.

Family and domain databases

Gene3Di 3.40.640.10. 1 hit.
InterProi IPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view ]
PANTHERi PTHR11999:SF1. PTHR11999:SF1. 1 hit.
Pfami PF00282. Pyridoxal_deC. 1 hit.
[Graphical view ]
SUPFAMi SSF53383. SSF53383. 1 hit.
TIGRFAMsi TIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Complete gnome sequence of a novel clinical isolate, the nontuberculous Mycobacterium strain JDM601."
    Zhang Z.Y., Sun Z.Q., Wang Z.L., Wen Z.L., Sun Q.W., Zhu Z.Q., Song Y.Z., Zhao J.W., Wang H.H., Zhang S.L., Guo X.K.
    J. Bacteriol. 193:4300-4301(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: JDM601Imported.

Entry informationi

Entry nameiF5YXP1_MYCSD
AccessioniPrimary (citable) accession number: F5YXP1
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: October 29, 2014
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3