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F5YXP1 (F5YXP1_MYCSD) Unreviewed, UniProtKB/TrEMBL

Last modified October 16, 2013. Version 13. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:gadB EMBL AEF37245.1
Ordered Locus Names:JDM601_3245 EMBL AEF37245.1
OrganismMycobacterium sp. (strain JDM601) [Complete proteome] [HAMAP] EMBL AEF37245.1
Taxonomic identifier875328 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeMycobacterium

Protein attributes

Sequence length461 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Pyridoxal phosphate By similarity. RuleBase RU000382

Sequence similarities

Belongs to the group II decarboxylase family. RuleBase RU000382

Ontologies

Sequences

Sequence LengthMass (Da)Tools
F5YXP1 [UniParc].

Last modified July 27, 2011. Version 1.
Checksum: 04410B07E8FA6F35

FASTA46150,924
        10         20         30         40         50         60 
MTHSHPSVPA HTIAPAYTGR LFTSPVPALR MPDESMEPQA AYRFIHDELM LDGSSRLNLA 

        70         80         90        100        110        120 
TFVTTWMDPE ASALMAESFD KNMIDKDEYP ATAAIEQRCV SMVADLFHAE NLRDDDPASA 

       130        140        150        160        170        180 
IGVSTVGSSE AVMLGGLALK WRWRAKVGDW QGRTPNLVMG SNVQVVWEKF CRYFDVEPRY 

       190        200        210        220        230        240 
LPMAQGRYVI TPEQVVDAVD ENTIGVVAIL GTTYTGELEP VEAICAALDK LAAGGGPDVP 

       250        260        270        280        290        300 
VHVDAASGGF VVPFLHPDLK WDFRLPRVVS INVSGHKYGL TYPGIGFVVW RGADYLPEEL 

       310        320        330        340        350        360 
VFRVNYLGGD MPTFTLNFSR PGNQVVGQYY NFLRLGRSGY TEVMRTLSDT ARWLSHQLAD 

       370        380        390        400        410        420 
SEHFEVISDG SAIPVVSCRL AGKRGYTEFD VSHELRTFGW QVPAYTMPEG AEDVAVLRVV 

       430        440        450        460 
VREGLSADLA RALFDDTMKA VTALDRLKPG GHFDDQQHFS H 

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References

[1]"Complete genome sequence of a novel clinical isolate, the nontuberculous Mycobacterium strain JDM601."
Zhang Z.Y., Sun Z.Q., Wang Z.L., Wen Z.L., Sun Q.W., Zhu Z.Q., Song Y.Z., Zhao J.W., Wang H.H., Zhang S.L., Guo X.K.
J. Bacteriol. 193:4300-4301(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: JDM601 EMBL AEF37245.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002329 Genomic DNA. Translation: AEF37245.1.
RefSeqYP_004524499.1. NC_015576.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEF37245; AEF37245; JDM601_3245.
GeneID10685278.
KEGGmjd:JDM601_3245.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01580.

Enzyme and pathway databases

BioCycMSP875328:GHLX-3289-MONOMER.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
InterProIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PANTHERPTHR11999:SF1. PTHR11999:SF1. 1 hit.
PfamPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMSSF53383. SSF53383. 1 hit.
TIGRFAMsTIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNetSearch...

Entry information

Entry nameF5YXP1_MYCSD
AccessionPrimary (citable) accession number: F5YXP1
Entry history
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: October 16, 2013
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)