F5YXP1 (F5YXP1_MYCSD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Glutamate decarboxylase GadB EMBL AEF37245.1

Gene names

Name:	gadB EMBL AEF37245.1
Ordered Locus Names:	JDM601_3245 EMBL AEF37245.1

Organism

Mycobacterium sp. (strain JDM601) [Complete proteome] [HAMAP]

Taxonomic identifier

875328 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Mycobacteriaceae › Mycobacterium

Protein attributes

Sequence length	461 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Cofactor	Pyridoxal phosphate By similarity. RuleBase RU000382
Sequence similarities	Belongs to the group II decarboxylase family. RuleBase RU000382

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU000382
Molecular function	Lyase RuleBase RU000382
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	glutamate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	glutamate decarboxylase activity Inferred from electronic annotation. Source: InterPro pyridoxal phosphate binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F5YXP1 [UniParc]. Last modified July 27, 2011. Version 1. Checksum: 04410B07E8FA6F35	FASTA	461	50,924
	10 20 30 40 50 60 MTHSHPSVPA HTIAPAYTGR LFTSPVPALR MPDESMEPQA AYRFIHDELM LDGSSRLNLA 70 80 90 100 110 120 TFVTTWMDPE ASALMAESFD KNMIDKDEYP ATAAIEQRCV SMVADLFHAE NLRDDDPASA 130 140 150 160 170 180 IGVSTVGSSE AVMLGGLALK WRWRAKVGDW QGRTPNLVMG SNVQVVWEKF CRYFDVEPRY 190 200 210 220 230 240 LPMAQGRYVI TPEQVVDAVD ENTIGVVAIL GTTYTGELEP VEAICAALDK LAAGGGPDVP 250 260 270 280 290 300 VHVDAASGGF VVPFLHPDLK WDFRLPRVVS INVSGHKYGL TYPGIGFVVW RGADYLPEEL 310 320 330 340 350 360 VFRVNYLGGD MPTFTLNFSR PGNQVVGQYY NFLRLGRSGY TEVMRTLSDT ARWLSHQLAD 370 380 390 400 410 420 SEHFEVISDG SAIPVVSCRL AGKRGYTEFD VSHELRTFGW QVPAYTMPEG AEDVAVLRVV 430 440 450 460 VREGLSADLA RALFDDTMKA VTALDRLKPG GHFDDQQHFS H

References

[1]

"Complete gnome sequence of a novel clinical isolate, the nontuberculous Mycobacterium strain JDM601." Zhang Z.Y., Sun Z.Q., Wang Z.L., Wen Z.L., Sun Q.W., Zhu Z.Q., Song Y.Z., Zhao J.W., Wang H.H., Zhang S.L., Guo X.K. J. Bacteriol. 193:4300-4301(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: JDM601 EMBL AEF37245.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002329 Genomic DNA. Translation: AEF37245.1.
RefSeq	YP_004524499.1. NC_015576.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEF37245; AEF37245; JDM601_3245.
GeneID	10685278.
KEGG	mjd:JDM601_3245.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01580.
Enzyme and pathway databases
BioCyc	MSP875328:GHLX-3246-MONOMER.
Family and domain databases
Gene3D	3.40.640.10. 1 hit.
InterPro	IPR010107. Glutamate_decarboxylase. IPR002129. PyrdxlP-dep_de-COase. IPR015424. PyrdxlP-dep_Trfase. IPR015421. PyrdxlP-dep_Trfase_major_sub1. [Graphical view]
PANTHER	PTHR11999:SF1. PTHR11999:SF1. 1 hit.
Pfam	PF00282. Pyridoxal_deC. 1 hit. [Graphical view]
SUPFAM	SSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMs	TIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNet	Search...

Entry information

Entry name

F5YXP1_MYCSD

Accession

Primary (citable) accession number: F5YXP1

Entry history

Integrated into UniProtKB/TrEMBL:	July 27, 2011
Last sequence update:	July 27, 2011
Last modified:	April 3, 2013
This is version 11 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)