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Protein

Glutamate decarboxylase

Gene

gadB

Organism
Mycobacterium sp. (strain JDM601)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

L-glutamate = 4-aminobutanoate + CO2.UniRule annotation

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

DecarboxylaseUniRule annotation, Lyase

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Enzyme and pathway databases

BioCyciMSP875328:GHLX-3289-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Glutamate decarboxylaseUniRule annotation (EC:4.1.1.15UniRule annotation)
Gene namesi
Name:gadBImported
Ordered Locus Names:JDM601_3245Imported
OrganismiMycobacterium sp. (strain JDM601)Imported
Taxonomic identifieri875328 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeMycobacterium
ProteomesiUP000009224 Componenti: Chromosome

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

KOiK01580.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
InterProiIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PANTHERiPTHR11999:SF1. PTHR11999:SF1. 1 hit.
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR01788. Glu-decarb-GAD. 1 hit.

Sequencei

Sequence statusi: Complete.

F5YXP1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTHSHPSVPA HTIAPAYTGR LFTSPVPALR MPDESMEPQA AYRFIHDELM
60 70 80 90 100
LDGSSRLNLA TFVTTWMDPE ASALMAESFD KNMIDKDEYP ATAAIEQRCV
110 120 130 140 150
SMVADLFHAE NLRDDDPASA IGVSTVGSSE AVMLGGLALK WRWRAKVGDW
160 170 180 190 200
QGRTPNLVMG SNVQVVWEKF CRYFDVEPRY LPMAQGRYVI TPEQVVDAVD
210 220 230 240 250
ENTIGVVAIL GTTYTGELEP VEAICAALDK LAAGGGPDVP VHVDAASGGF
260 270 280 290 300
VVPFLHPDLK WDFRLPRVVS INVSGHKYGL TYPGIGFVVW RGADYLPEEL
310 320 330 340 350
VFRVNYLGGD MPTFTLNFSR PGNQVVGQYY NFLRLGRSGY TEVMRTLSDT
360 370 380 390 400
ARWLSHQLAD SEHFEVISDG SAIPVVSCRL AGKRGYTEFD VSHELRTFGW
410 420 430 440 450
QVPAYTMPEG AEDVAVLRVV VREGLSADLA RALFDDTMKA VTALDRLKPG
460
GHFDDQQHFS H
Length:461
Mass (Da):50,924
Last modified:July 27, 2011 - v1
Checksum:i04410B07E8FA6F35
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002329 Genomic DNA. Translation: AEF37245.1.
RefSeqiWP_013830174.1. NC_015576.1.
YP_004524499.1. NC_015576.1.

Genome annotation databases

EnsemblBacteriaiAEF37245; AEF37245; JDM601_3245.
KEGGimjd:JDM601_3245.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002329 Genomic DNA. Translation: AEF37245.1.
RefSeqiWP_013830174.1. NC_015576.1.
YP_004524499.1. NC_015576.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEF37245; AEF37245; JDM601_3245.
KEGGimjd:JDM601_3245.

Phylogenomic databases

KOiK01580.

Enzyme and pathway databases

BioCyciMSP875328:GHLX-3289-MONOMER.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
InterProiIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PANTHERiPTHR11999:SF1. PTHR11999:SF1. 1 hit.
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete gnome sequence of a novel clinical isolate, the nontuberculous Mycobacterium strain JDM601."
    Zhang Z.Y., Sun Z.Q., Wang Z.L., Wen Z.L., Sun Q.W., Zhu Z.Q., Song Y.Z., Zhao J.W., Wang H.H., Zhang S.L., Guo X.K.
    J. Bacteriol. 193:4300-4301(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: JDM601Imported.

Entry informationi

Entry nameiF5YXP1_MYCSD
AccessioniPrimary (citable) accession number: F5YXP1
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: April 1, 2015
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.