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F5YT53

- F5YT53_MYCSD

UniProt

F5YT53 - F5YT53_MYCSD

Protein
Submitted name:

ATP dependent DNA ligase

Gene

JDM601_0881

Organism
Mycobacterium sp. (strain JDM601)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 16 (01 Oct 2014)
      Sequence version 1 (27 Jul 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciMSP875328:GHLX-895-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:JDM601_0881Imported
    OrganismiMycobacterium sp. (strain JDM601)Imported
    Taxonomic identifieri875328 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeMycobacterium
    ProteomesiUP000009224: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F5YT53-1 [UniParc]FASTAAdd to Basket

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    MAAQPFQTRV KLTNADKVLY PATGTTKAQV YHYYTRIAEV MLPHIAGRPV    50
    TRKRWPNGVA QDSFFEKQLA SSAPAWLPRA EVQHRSGITA YPIIDDLDGL 100
    AWIAQQAALE VHVPQWRFEA EWTGGGRVLK PGPASRLVFD LDPGEGVSMS 150
    QLAQVARAIR DLMAELDLDT FPVTSGSKGI HVYAALDRPV ASAGAVAVAK 200
    RVAQQLESAM PKLVTATMAK KLRAGKVFVD WSQNNASKTT IAPYSLRGRD 250
    HPTVAAPRSW AELDDPDLRQ LRFDEVLERV EHDGDLLAGL DGPLEGQDRL 300
    AVYRAKRDAG RTPEPVPAAA PAAGEGNSFV IQEHHARRLH YDFRLERDGV 350
    LVSWAVPKNL PTTTSVNHLA VRTEDHPLEY GGFEGTIPKG EYGAGTVRIW 400
    DSGSYVTEKW QDTSEKGEVI VVLRGDRISG RYALIRTGGD QWLAHRMKDQ 450
    QTFAFTDLAP MLATHGSVSG LDPKVWAFEG KWDGYRLLVE ADRGRVRLRA 500
    RSGRDVTGEY PQLQTLAAEL TEHHVVLDGE VVALDAAGVP SFAAMQNSAR 550
    STRVKFWAFD LLYLDGRPLL RAAYRDRRRL LATLAQGTGL VVKDLLAAGG 600
    AEALEQSRRL GWEGVIAKKW DSPYQPGRRS PAWVKDKHWR TQEVVIGGWR 650
    AGEGARGGGI GSLLMGIPEG DGLRFVGRVG TGFTERALAA LKKELTPTDE 700
    SPFDAPLPRA DAKGVTFVRP TLVGEVRYSE RTADGRLRQP SWRGLRPDKT 750
    PDDVVSED 758
    Length:758
    Mass (Da):83,365
    Last modified:July 27, 2011 - v1
    Checksum:i271D73726A939AE0
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002329 Genomic DNA. Translation: AEF34881.1.
    RefSeqiWP_013827823.1. NC_015576.1.
    YP_004522135.1. NC_015576.1.

    Genome annotation databases

    EnsemblBacteriaiAEF34881; AEF34881; JDM601_0881.
    GeneIDi10682884.
    KEGGimjd:JDM601_0881.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002329 Genomic DNA. Translation: AEF34881.1 .
    RefSeqi WP_013827823.1. NC_015576.1.
    YP_004522135.1. NC_015576.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEF34881 ; AEF34881 ; JDM601_0881 .
    GeneIDi 10682884.
    KEGGi mjd:JDM601_0881.

    Phylogenomic databases

    KOi K01971.

    Enzyme and pathway databases

    BioCyci MSP875328:GHLX-895-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete gnome sequence of a novel clinical isolate, the nontuberculous Mycobacterium strain JDM601."
      Zhang Z.Y., Sun Z.Q., Wang Z.L., Wen Z.L., Sun Q.W., Zhu Z.Q., Song Y.Z., Zhao J.W., Wang H.H., Zhang S.L., Guo X.K.
      J. Bacteriol. 193:4300-4301(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: JDM601Imported.

    Entry informationi

    Entry nameiF5YT53_MYCSD
    AccessioniPrimary (citable) accession number: F5YT53
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 27, 2011
    Last sequence update: July 27, 2011
    Last modified: October 1, 2014
    This is version 16 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3