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Protein
Submitted name:

ATP dependent DNA ligase

Gene

JDM601_0881

Organism
Mycobacterium sp. (strain JDM601)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciMSP875328:GHLX-895-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:JDM601_0881Imported
OrganismiMycobacterium sp. (strain JDM601)Imported
Taxonomic identifieri875328 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeMycobacterium
ProteomesiUP000009224 Componenti: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F5YT53-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAAQPFQTRV KLTNADKVLY PATGTTKAQV YHYYTRIAEV MLPHIAGRPV
60 70 80 90 100
TRKRWPNGVA QDSFFEKQLA SSAPAWLPRA EVQHRSGITA YPIIDDLDGL
110 120 130 140 150
AWIAQQAALE VHVPQWRFEA EWTGGGRVLK PGPASRLVFD LDPGEGVSMS
160 170 180 190 200
QLAQVARAIR DLMAELDLDT FPVTSGSKGI HVYAALDRPV ASAGAVAVAK
210 220 230 240 250
RVAQQLESAM PKLVTATMAK KLRAGKVFVD WSQNNASKTT IAPYSLRGRD
260 270 280 290 300
HPTVAAPRSW AELDDPDLRQ LRFDEVLERV EHDGDLLAGL DGPLEGQDRL
310 320 330 340 350
AVYRAKRDAG RTPEPVPAAA PAAGEGNSFV IQEHHARRLH YDFRLERDGV
360 370 380 390 400
LVSWAVPKNL PTTTSVNHLA VRTEDHPLEY GGFEGTIPKG EYGAGTVRIW
410 420 430 440 450
DSGSYVTEKW QDTSEKGEVI VVLRGDRISG RYALIRTGGD QWLAHRMKDQ
460 470 480 490 500
QTFAFTDLAP MLATHGSVSG LDPKVWAFEG KWDGYRLLVE ADRGRVRLRA
510 520 530 540 550
RSGRDVTGEY PQLQTLAAEL TEHHVVLDGE VVALDAAGVP SFAAMQNSAR
560 570 580 590 600
STRVKFWAFD LLYLDGRPLL RAAYRDRRRL LATLAQGTGL VVKDLLAAGG
610 620 630 640 650
AEALEQSRRL GWEGVIAKKW DSPYQPGRRS PAWVKDKHWR TQEVVIGGWR
660 670 680 690 700
AGEGARGGGI GSLLMGIPEG DGLRFVGRVG TGFTERALAA LKKELTPTDE
710 720 730 740 750
SPFDAPLPRA DAKGVTFVRP TLVGEVRYSE RTADGRLRQP SWRGLRPDKT

PDDVVSED
Length:758
Mass (Da):83,365
Last modified:July 27, 2011 - v1
Checksum:i271D73726A939AE0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002329 Genomic DNA. Translation: AEF34881.1.
RefSeqiWP_013827823.1. NC_015576.1.
YP_004522135.1. NC_015576.1.

Genome annotation databases

EnsemblBacteriaiAEF34881; AEF34881; JDM601_0881.
KEGGimjd:JDM601_0881.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002329 Genomic DNA. Translation: AEF34881.1.
RefSeqiWP_013827823.1. NC_015576.1.
YP_004522135.1. NC_015576.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEF34881; AEF34881; JDM601_0881.
KEGGimjd:JDM601_0881.

Phylogenomic databases

KOiK01971.

Enzyme and pathway databases

BioCyciMSP875328:GHLX-895-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete gnome sequence of a novel clinical isolate, the nontuberculous Mycobacterium strain JDM601."
    Zhang Z.Y., Sun Z.Q., Wang Z.L., Wen Z.L., Sun Q.W., Zhu Z.Q., Song Y.Z., Zhao J.W., Wang H.H., Zhang S.L., Guo X.K.
    J. Bacteriol. 193:4300-4301(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: JDM601Imported.

Entry informationi

Entry nameiF5YT53_MYCSD
AccessioniPrimary (citable) accession number: F5YT53
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: April 29, 2015
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.