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F5YT53 (F5YT53_MYCSD) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 10. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
ATP dependent DNA ligase EMBL AEF34881.1
Gene names
Ordered Locus Names:JDM601_0881 EMBL AEF34881.1
OrganismMycobacterium sp. (strain JDM601) [Complete proteome] [HAMAP]
Taxonomic identifier875328 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Mycobacteriaceae › Mycobacterium

Protein attributes

Sequence length758 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL AEF34881.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

DNA primase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
F5YT53 [UniParc].

Last modified July 27, 2011. Version 1.
Checksum: 271D73726A939AE0

FASTA75883,365
        10         20         30         40         50         60 
MAAQPFQTRV KLTNADKVLY PATGTTKAQV YHYYTRIAEV MLPHIAGRPV TRKRWPNGVA 

        70         80         90        100        110        120 
QDSFFEKQLA SSAPAWLPRA EVQHRSGITA YPIIDDLDGL AWIAQQAALE VHVPQWRFEA 

       130        140        150        160        170        180 
EWTGGGRVLK PGPASRLVFD LDPGEGVSMS QLAQVARAIR DLMAELDLDT FPVTSGSKGI 

       190        200        210        220        230        240 
HVYAALDRPV ASAGAVAVAK RVAQQLESAM PKLVTATMAK KLRAGKVFVD WSQNNASKTT 

       250        260        270        280        290        300 
IAPYSLRGRD HPTVAAPRSW AELDDPDLRQ LRFDEVLERV EHDGDLLAGL DGPLEGQDRL 

       310        320        330        340        350        360 
AVYRAKRDAG RTPEPVPAAA PAAGEGNSFV IQEHHARRLH YDFRLERDGV LVSWAVPKNL 

       370        380        390        400        410        420 
PTTTSVNHLA VRTEDHPLEY GGFEGTIPKG EYGAGTVRIW DSGSYVTEKW QDTSEKGEVI 

       430        440        450        460        470        480 
VVLRGDRISG RYALIRTGGD QWLAHRMKDQ QTFAFTDLAP MLATHGSVSG LDPKVWAFEG 

       490        500        510        520        530        540 
KWDGYRLLVE ADRGRVRLRA RSGRDVTGEY PQLQTLAAEL TEHHVVLDGE VVALDAAGVP 

       550        560        570        580        590        600 
SFAAMQNSAR STRVKFWAFD LLYLDGRPLL RAAYRDRRRL LATLAQGTGL VVKDLLAAGG 

       610        620        630        640        650        660 
AEALEQSRRL GWEGVIAKKW DSPYQPGRRS PAWVKDKHWR TQEVVIGGWR AGEGARGGGI 

       670        680        690        700        710        720 
GSLLMGIPEG DGLRFVGRVG TGFTERALAA LKKELTPTDE SPFDAPLPRA DAKGVTFVRP 

       730        740        750 
TLVGEVRYSE RTADGRLRQP SWRGLRPDKT PDDVVSED

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References

[1]"Complete gnome sequence of a novel clinical isolate, the nontuberculous Mycobacterium strain JDM601."
Zhang Z.Y., Sun Z.Q., Wang Z.L., Wen Z.L., Sun Q.W., Zhu Z.Q., Song Y.Z., Zhao J.W., Wang H.H., Zhang S.L., Guo X.K.
J. Bacteriol. 193:4300-4301(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: JDM601 EMBL AEF34881.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP002329 Genomic DNA. Translation: AEF34881.1.
RefSeqYP_004522135.1. NC_015576.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEF34881; AEF34881; JDM601_0881.
GeneID10682884.
KEGGmjd:JDM601_0881.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycMSP875328:GHLX-882-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF5YT53_MYCSD
AccessionPrimary (citable) accession number: F5YT53
Entry history
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: April 3, 2013
This is version 10 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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