F5YT34 (F5YT34_MYCSD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP-dependent DNA ligase LigC EMBL AEF38023.1

Gene names

Name:	ligC EMBL AEF38023.1
Ordered Locus Names:	JDM601_4023 EMBL AEF38023.1

Organism

Mycobacterium sp. (strain JDM601) [Complete proteome] [HAMAP]

Taxonomic identifier

875328 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Mycobacteriaceae › Mycobacterium

Protein attributes

Sequence length	350 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL AEF38023.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F5YT34 [UniParc]. Last modified July 27, 2011. Version 1. Checksum: D72DE9242B30F645	FASTA	350	38,933
	10 20 30 40 50 60 MVLIDMMDTM DLPVAPPVDP MLAKAAVKVP ADAGRWSYEP KWDGFRAIVF RDGDEVLLQS 70 80 90 100 110 120 RNGKPLGRYF PELLEALRAE VGPRCVLDGE VVVPRQIDGR TRLDWESLSQ RIHPADSRVR 130 140 150 160 170 180 LLAEQTPAQF IGFDALATGS VSLLDEPFRV RRQALADSIH AGPSCHVTRA TDDPEQATVW 190 200 210 220 230 240 LTSFEGAGLD GVVAKRTDGP YLPGKREMVK VKHRRDADCV VMGYRIHKSG NGIGSLLLGL 250 260 270 280 290 300 YRPDGELAMV GGAASFTDAD RLALLAELEP LRIGDVREGE PSRWNSAADK QWVPIRPERV 310 320 330 340 350 AEVAYDQMEG DRFRHTVKLL RWRPDRDPAS CTFDQLDVPL TYDLVDVLET

References

[1]

"Complete gnome sequence of a novel clinical isolate, the nontuberculous Mycobacterium strain JDM601." Zhang Z.Y., Sun Z.Q., Wang Z.L., Wen Z.L., Sun Q.W., Zhu Z.Q., Song Y.Z., Zhao J.W., Wang H.H., Zhang S.L., Guo X.K. J. Bacteriol. 193:4300-4301(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: JDM601 EMBL AEF38023.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002329 Genomic DNA. Translation: AEF38023.1.
RefSeq	YP_004525277.1. NC_015576.1.
3D structure databases
ProteinModelPortal	F5YT34.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEF38023; AEF38023; JDM601_4023.
GeneID	10686060.
KEGG	mjd:JDM601_4023.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01971.
Enzyme and pathway databases
BioCyc	MSP875328:GHLX-4024-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

F5YT34_MYCSD

Accession

Primary (citable) accession number: F5YT34

Entry history

Integrated into UniProtKB/TrEMBL:	July 27, 2011
Last sequence update:	July 27, 2011
Last modified:	April 3, 2013
This is version 10 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)