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F5YT34 (F5YT34_MYCSD) Unreviewed, UniProtKB/TrEMBL

Last modified October 16, 2013. Version 12. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:ligC EMBL AEF38023.1
Ordered Locus Names:JDM601_4023 EMBL AEF38023.1
OrganismMycobacterium sp. (strain JDM601) [Complete proteome] [HAMAP] EMBL AEF38023.1
Taxonomic identifier875328 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeMycobacterium

Protein attributes

Sequence length350 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Sequences

Sequence LengthMass (Da)Tools
F5YT34 [UniParc].

Last modified July 27, 2011. Version 1.
Checksum: D72DE9242B30F645

FASTA35038,933
        10         20         30         40         50         60 
MVLIDMMDTM DLPVAPPVDP MLAKAAVKVP ADAGRWSYEP KWDGFRAIVF RDGDEVLLQS 

        70         80         90        100        110        120 
RNGKPLGRYF PELLEALRAE VGPRCVLDGE VVVPRQIDGR TRLDWESLSQ RIHPADSRVR 

       130        140        150        160        170        180 
LLAEQTPAQF IGFDALATGS VSLLDEPFRV RRQALADSIH AGPSCHVTRA TDDPEQATVW 

       190        200        210        220        230        240 
LTSFEGAGLD GVVAKRTDGP YLPGKREMVK VKHRRDADCV VMGYRIHKSG NGIGSLLLGL 

       250        260        270        280        290        300 
YRPDGELAMV GGAASFTDAD RLALLAELEP LRIGDVREGE PSRWNSAADK QWVPIRPERV 

       310        320        330        340        350 
AEVAYDQMEG DRFRHTVKLL RWRPDRDPAS CTFDQLDVPL TYDLVDVLET 

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References

[1]"Complete genome sequence of a novel clinical isolate, the nontuberculous Mycobacterium strain JDM601."
Zhang Z.Y., Sun Z.Q., Wang Z.L., Wen Z.L., Sun Q.W., Zhu Z.Q., Song Y.Z., Zhao J.W., Wang H.H., Zhang S.L., Guo X.K.
J. Bacteriol. 193:4300-4301(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: JDM601 EMBL AEF38023.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002329 Genomic DNA. Translation: AEF38023.1.
RefSeqYP_004525277.1. NC_015576.1.

3D structure databases

ProteinModelPortalF5YT34.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEF38023; AEF38023; JDM601_4023.
GeneID10686060.
KEGGmjd:JDM601_4023.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycMSP875328:GHLX-4071-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF5YT34_MYCSD
AccessionPrimary (citable) accession number: F5YT34
Entry history
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: October 16, 2013
This is version 12 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)