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Protein
Submitted name:

ATP-dependent DNA ligase LigC

Gene

ligC

Organism
Mycobacterium sp. (strain JDM601)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciMSP875328:GHLX-4071-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigCImported
Gene namesi
Name:ligCImported
Ordered Locus Names:JDM601_4023Imported
OrganismiMycobacterium sp. (strain JDM601)Imported
Taxonomic identifieri875328 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaCorynebacterialesMycobacteriaceaeMycobacterium
ProteomesiUP000009224 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi875328.JDM601_4023.

Structurei

3D structure databases

ProteinModelPortaliF5YT34.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

OMAiYRPHKSQ.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F5YT34-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVLIDMMDTM DLPVAPPVDP MLAKAAVKVP ADAGRWSYEP KWDGFRAIVF
60 70 80 90 100
RDGDEVLLQS RNGKPLGRYF PELLEALRAE VGPRCVLDGE VVVPRQIDGR
110 120 130 140 150
TRLDWESLSQ RIHPADSRVR LLAEQTPAQF IGFDALATGS VSLLDEPFRV
160 170 180 190 200
RRQALADSIH AGPSCHVTRA TDDPEQATVW LTSFEGAGLD GVVAKRTDGP
210 220 230 240 250
YLPGKREMVK VKHRRDADCV VMGYRIHKSG NGIGSLLLGL YRPDGELAMV
260 270 280 290 300
GGAASFTDAD RLALLAELEP LRIGDVREGE PSRWNSAADK QWVPIRPERV
310 320 330 340 350
AEVAYDQMEG DRFRHTVKLL RWRPDRDPAS CTFDQLDVPL TYDLVDVLET
Length:350
Mass (Da):38,933
Last modified:July 27, 2011 - v1
Checksum:iD72DE9242B30F645
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002329 Genomic DNA. Translation: AEF38023.1.

Genome annotation databases

EnsemblBacteriaiAEF38023; AEF38023; JDM601_4023.
KEGGimjd:JDM601_4023.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002329 Genomic DNA. Translation: AEF38023.1.

3D structure databases

ProteinModelPortaliF5YT34.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi875328.JDM601_4023.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEF38023; AEF38023; JDM601_4023.
KEGGimjd:JDM601_4023.

Phylogenomic databases

OMAiYRPHKSQ.

Enzyme and pathway databases

BioCyciMSP875328:GHLX-4071-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete gnome sequence of a novel clinical isolate, the nontuberculous Mycobacterium strain JDM601."
    Zhang Z.Y., Sun Z.Q., Wang Z.L., Wen Z.L., Sun Q.W., Zhu Z.Q., Song Y.Z., Zhao J.W., Wang H.H., Zhang S.L., Guo X.K.
    J. Bacteriol. 193:4300-4301(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: JDM601Imported.

Entry informationi

Entry nameiF5YT34_MYCSD
AccessioniPrimary (citable) accession number: F5YT34
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: July 22, 2015
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.