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F5YT34

- F5YT34_MYCSD

UniProt

F5YT34 - F5YT34_MYCSD

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Protein
Submitted name:

ATP-dependent DNA ligase LigC

Gene

ligC

Organism
Mycobacterium sp. (strain JDM601)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciMSP875328:GHLX-4071-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigCImported
Gene namesi
Name:ligCImported
Ordered Locus Names:JDM601_4023Imported
OrganismiMycobacterium sp. (strain JDM601)Imported
Taxonomic identifieri875328 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeMycobacterium
ProteomesiUP000009224: Chromosome

Structurei

3D structure databases

ProteinModelPortaliF5YT34.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F5YT34-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MVLIDMMDTM DLPVAPPVDP MLAKAAVKVP ADAGRWSYEP KWDGFRAIVF
60 70 80 90 100
RDGDEVLLQS RNGKPLGRYF PELLEALRAE VGPRCVLDGE VVVPRQIDGR
110 120 130 140 150
TRLDWESLSQ RIHPADSRVR LLAEQTPAQF IGFDALATGS VSLLDEPFRV
160 170 180 190 200
RRQALADSIH AGPSCHVTRA TDDPEQATVW LTSFEGAGLD GVVAKRTDGP
210 220 230 240 250
YLPGKREMVK VKHRRDADCV VMGYRIHKSG NGIGSLLLGL YRPDGELAMV
260 270 280 290 300
GGAASFTDAD RLALLAELEP LRIGDVREGE PSRWNSAADK QWVPIRPERV
310 320 330 340 350
AEVAYDQMEG DRFRHTVKLL RWRPDRDPAS CTFDQLDVPL TYDLVDVLET
Length:350
Mass (Da):38,933
Last modified:July 27, 2011 - v1
Checksum:iD72DE9242B30F645
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002329 Genomic DNA. Translation: AEF38023.1.
RefSeqiWP_013830944.1. NC_015576.1.
YP_004525277.1. NC_015576.1.

Genome annotation databases

EnsemblBacteriaiAEF38023; AEF38023; JDM601_4023.
GeneIDi10686060.
KEGGimjd:JDM601_4023.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002329 Genomic DNA. Translation: AEF38023.1 .
RefSeqi WP_013830944.1. NC_015576.1.
YP_004525277.1. NC_015576.1.

3D structure databases

ProteinModelPortali F5YT34.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AEF38023 ; AEF38023 ; JDM601_4023 .
GeneIDi 10686060.
KEGGi mjd:JDM601_4023.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci MSP875328:GHLX-4071-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete gnome sequence of a novel clinical isolate, the nontuberculous Mycobacterium strain JDM601."
    Zhang Z.Y., Sun Z.Q., Wang Z.L., Wen Z.L., Sun Q.W., Zhu Z.Q., Song Y.Z., Zhao J.W., Wang H.H., Zhang S.L., Guo X.K.
    J. Bacteriol. 193:4300-4301(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: JDM601Imported.

Entry informationi

Entry nameiF5YT34_MYCSD
AccessioniPrimary (citable) accession number: F5YT34
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: October 1, 2014
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3