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F5YRS0 (F5YRS0_MYCSD) Unreviewed, UniProtKB/TrEMBL

Last modified October 16, 2013. Version 13. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:treS EMBL AEF37861.1
Ordered Locus Names:JDM601_3861 EMBL AEF37861.1
OrganismMycobacterium sp. (strain JDM601) [Complete proteome] [HAMAP] EMBL AEF37861.1
Taxonomic identifier875328 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeMycobacterium

Protein attributes

Sequence length596 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular_functioncatalytic activity

Inferred from electronic annotation. Source: InterPro

cation binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
F5YRS0 [UniParc].

Last modified July 27, 2011. Version 1.
Checksum: AC9B1ACF2C77EDA1

FASTA59668,266
        10         20         30         40         50         60 
MATDVDDEFG QDLPDPAAGS HVEHGLVEHP TADDFGDAAA LPADPVWFKR AVFYEVLVRA 

        70         80         90        100        110        120 
FYDSNGDGIG DLRGLTERLD YLQWLGVDCL WLPPFYDSPL RDGGYDIRDF YKVLPEFGTV 

       130        140        150        160        170        180 
DDFVELLDAA HRRGIRVITD LVMNHTSDSH PWFQQSRHDP DGPHGDFYVW SDTSERYADA 

       190        200        210        220        230        240 
RIIFVDTEES NWTFDAVRKQ FYWHRFFSHQ PDLNYENPAV QEAMIDVLRF WLNLGIDGFR 

       250        260        270        280        290        300 
LDAVPYLFER EGTNCENLPE THAFLKRCRK VVDEEFPGRV LLAEANQWPS DVVEYFGDPE 

       310        320        330        340        350        360 
TGGDECHMAF HFPLMPRIFM AVRRESRFPI SEILAQTPPI PQLAQWGIFL RNHDELTLEM 

       370        380        390        400        410        420 
VTDDERDYMY AEYAKDPRMK ANVGIRRRLA PLLDKDRNQI ELFTALLLSL PGSPILYYGD 

       430        440        450        460        470        480 
EIGMGDIIWL GDRDAVRTPM QWTPDRNAGF STANPGRLYL PPIQDAVYGH QSVNVEAQRD 

       490        500        510        520        530        540 
TSTSLLNWTR TMLAIRRRYD AFALGGFREL GGSNPSVLAY VRELSGDEGH TVLCVNNLSR 

       550        560        570        580        590 
FPQPIELNLQ HWDGHAPVEL TGSVEFPAIG KLPYLLTLPG HGFYWFQLCE PKEDMS 

« Hide

References

[1]"Complete genome sequence of a novel clinical isolate, the nontuberculous Mycobacterium strain JDM601."
Zhang Z.Y., Sun Z.Q., Wang Z.L., Wen Z.L., Sun Q.W., Zhu Z.Q., Song Y.Z., Zhao J.W., Wang H.H., Zhang S.L., Guo X.K.
J. Bacteriol. 193:4300-4301(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: JDM601 EMBL AEF37861.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002329 Genomic DNA. Translation: AEF37861.1.
RefSeqYP_004525115.1. NC_015576.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEF37861; AEF37861; JDM601_3861.
GeneID10685895.
KEGGmjd:JDM601_3861.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK05343.

Enzyme and pathway databases

BioCycMSP875328:GHLX-3906-MONOMER.

Family and domain databases

Gene3D2.60.40.1180. 1 hit.
3.20.20.80. 3 hits.
InterProIPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR012810. TreS/a-amylase_N.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
[Graphical view]
SMARTSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMSSF51445. SSF51445. 2 hits.
TIGRFAMsTIGR02456. treS_nterm. 1 hit.
ProtoNetSearch...

Entry information

Entry nameF5YRS0_MYCSD
AccessionPrimary (citable) accession number: F5YRS0
Entry history
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: October 16, 2013
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)