F5YQS3 (F5YQS3_TREPZ) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Pseudouridine synthase RuleBase RU003886
EC=5.4.99.- RuleBase RU003886

Gene names

Name:	rluD_2 EMBL AEF84870.1
Ordered Locus Names:	TREPR_1368 EMBL AEF84870.1

Organism

Treponema primitia (strain ATCC BAA-887 / DSM 12427 / ZAS-2) [Complete proteome] [HAMAP]

Taxonomic identifier

545694 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Spirochaetes › Spirochaetia › Spirochaetales › Spirochaetaceae › Treponema › Treponema primitia

Protein attributes

Sequence length	237 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the pseudouridine synthase rluA family. RuleBase RU004243

Ontologies

Keywords
Molecular function	Isomerase RuleBase RU003886
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	pseudouridine synthesis Inferred from electronic annotation. Source: InterPro
Molecular_function	RNA binding Inferred from electronic annotation. Source: InterPro pseudouridine synthase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F5YQS3 [UniParc]. Last modified July 27, 2011. Version 1. Checksum: 646B021A545D8E64	FASTA	237	26,558
	10 20 30 40 50 60 MKPAYPRTLA QGLVLIYEDR DILVADKPPG LLSIATGSER EKTAYWILSE YLRKKGEKRR 70 80 90 100 110 120 AAVVHRLDRD TSGVMLFAKS EAVKRKLMEH WDETVEERRY LALAEGEFAE AQGIIDAPLG 130 140 150 160 170 180 EDSRGRVVVV RGGQQNGAAS KTWRAITHWK LLKAGNGFSL LSLELETGRR NQIRAHLAHL 190 200 210 220 230 GHPVAGDPKY GAKTNPLKRL CLHAEVLVFH HPHDGKLMEF EVKVPGGFFQ VLGPRSR

References

[1]

"Complete sequence of Treponema primitia strain ZAS-2." Tetu S.G., Matson E., Ren Q., Seshadri R., Elbourne L., Hassan K.A., Durkin A., Radune D., Mohamoud Y., Shay R., Jin S., Zhang X., Lucey K., Ballor N.R., Ottesen E., Rosenthal R., Allen A., Leadbetter J.R., Paulsen I.T. Submitted (DEC-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC BAA-887 / DSM 12427 / ZAS-2.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001843 Genomic DNA. Translation: AEF84870.1.
RefSeq	YP_004531596.1. NC_015578.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEF84870; AEF84870; TREPR_1368.
GeneID	10680554.
KEGG	tpi:TREPR_1368.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K06180.
Family and domain databases
InterPro	IPR020103. PsdUridine_synth_cat_dom. IPR006224. PsdUridine_synth_RluC/D_CS. IPR006145. PsdUridine_synth_RsuA/RluD. [Graphical view]
Pfam	PF00849. PseudoU_synth_2. 1 hit. [Graphical view]
SUPFAM	SSF55120. PsdUridine_synth_cat_dom. 1 hit.
PROSITE	PS01129. PSI_RLU. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

F5YQS3_TREPZ

Accession

Primary (citable) accession number: F5YQS3

Entry history

Integrated into UniProtKB/TrEMBL:	July 27, 2011
Last sequence update:	July 27, 2011
Last modified:	April 3, 2013
This is version 8 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)