Skip Header

Contribute Send feedback
Read comments (?) or add your own

F5YBY1 (F5YBY1_TREAZ) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 15. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
Lysine--tRNA ligase HAMAP-Rule MF_00177
EC=6.1.1.6 HAMAP-Rule MF_00177
Alternative name(s):
Lysyl-tRNA synthetase HAMAP-Rule MF_00177
Gene names
Name:lysS HAMAP-Rule MF_00177 EMBL AEF80924.1
Ordered Locus Names:TREAZ_1825 EMBL AEF80924.1
OrganismTreponema azotonutricium (strain ATCC BAA-888 / DSM 13862 / ZAS-9) [Complete proteome] [HAMAP]
Taxonomic identifier545695 [NCBI]
Taxonomic lineageBacteria › Spirochaetes › Spirochaetales › Spirochaetaceae › Treponema ›

Protein attributes

Sequence length542 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + L-lysine + tRNA(Lys) = AMP + diphosphate + L-lysyl-tRNA(Lys). HAMAP-Rule MF_00177

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00177.

Sequence similarities

Belongs to the class-I aminoacyl-tRNA synthetase family. RuleBase RU003489 HAMAP-Rule MF_00177

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Motif42 – 509"HIGH" region By similarity HAMAP-Rule MF_00177
Motif294 – 2985"KMSKS" region By similarity HAMAP-Rule MF_00177

Sequences

Sequence LengthMass (Da)Tools
F5YBY1 [UniParc].

Last modified July 27, 2011. Version 1.
Checksum: 34935944DCC4AD3C

FASTA54261,709
        10         20         30         40         50         60 
MEKKNEASGA QASAHWADET AAKILREKGD KELYTCASGI TPSGTVHIGN FREIISTDLV 

        70         80         90        100        110        120 
VRALRDKGKK VRFIYSWDDY DVFRKVPKNM PQQEALNGHL RFPITMVPDP WGRDSSYARH 

       130        140        150        160        170        180 
HEVDIETVLP KVGVHPEFLY QAENYRSSKY AEGIRKALEH REALKNILDK FRDEEHKIQG 

       190        200        210        220        230        240 
EWWPVSAFCS ACNKDDTEID SWDGEWGVTY HCNSCGHKET ADIRTAKGIK LFWRIDWPMR 

       250        260        270        280        290        300 
WEYEKVDFEP AGKDHHSQGG SFDTAKHVCK DVYDWDAPVT FRYDFIGTKG LPGKMSSSSG 

       310        320        330        340        350        360 
NVITIEDVLN VYTPEVARYL FAGTRPNTEF TISFDLDVIK IYEDYDKTER IAFKAEPAKD 

       370        380        390        400        410        420 
EAVYQKERRI YELSQAAVTA EGKTKMPEIM PFQVPFRHLC NLIQIADGDI DKAIASIANL 

       430        440        450        460        470        480 
KPEQIPALKA RAACAKYWID ECAPEEFRFK LREPGETSDL ADNEKAAIKQ LRDEVISKID 

       490        500        510        520        530        540 
SFTDDKGCAE AIYKIAEAQG MEGKALFRAA YQALIGKDQG PRLANFLRSI NKDRLLGILK 


AY

« Hide

References

[1]"Complete sequence of Treponema azotonutricium strain ZAS-9."
Tetu S.G., Matson E., Ren Q., Seshadri R., Elbourne L., Hassan K.A., Durkin A., Radune D., Mohamoud Y., Shay R., Jin S., Zhang X., Lucey K., Ballor N.R., Ottesen E., Rosenthal R., Allen A., Leadbetter J.R., Paulsen I.T.
Submitted (DEC-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC BAA-888 / DSM 13862 / ZAS-9.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001841 Genomic DNA. Translation: AEF80924.1.
RefSeqYP_004526094.1. NC_015577.1.

3D structure databases

ProteinModelPortalF5YBY1.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEF80924; AEF80924; TREAZ_1825.
GeneID10678131.
KEGGtaz:TREAZ_1825.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK04566.

Family and domain databases

Gene3D1.10.10.350. 1 hit.
2.30.30.300. 1 hit.
3.40.50.620. 3 hits.
HAMAPMF_00177. Lys_tRNA_synth_class1.
InterProIPR008925. aa-tRNA-synth_I_codon-bd.
IPR020751. aa-tRNA-synth_I_codon-bd_sub2.
IPR001412. aa-tRNA-synth_I_CS.
IPR002904. Lys-tRNA-ligase.
IPR023386. Lys-tRNA-ligase_insertion.
IPR014729. Rossmann-like_a/b/a_fold.
[Graphical view]
PfamPF01921. tRNA-synt_1f. 1 hit.
[Graphical view]
SUPFAMSSF48163. tRNA-synt_bind. 1 hit.
TIGRFAMsTIGR00467. lysS_arch. 1 hit.
PROSITEPS00178. AA_TRNA_LIGASE_I. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF5YBY1_TREAZ
AccessionPrimary (citable) accession number: F5YBY1
Entry history
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: May 1, 2013
This is version 15 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info