Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

F5YBY1

- F5YBY1_TREAZ

UniProt

F5YBY1 - F5YBY1_TREAZ

Protein

Lysine--tRNA ligase

Gene

lysS

Organism
Treponema azotonutricium (strain ATCC BAA-888 / DSM 13862 / ZAS-9)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 20 (01 Oct 2014)
      Sequence version 1 (27 Jul 2011)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    Catalytic activityi

    ATP + L-lysine + tRNA(Lys) = AMP + diphosphate + L-lysyl-tRNA(Lys).UniRule annotation

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-HAMAP
    2. lysine-tRNA ligase activity Source: UniProtKB-HAMAP
    3. tRNA binding Source: InterPro

    GO - Biological processi

    1. lysyl-tRNA aminoacylation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Aminoacyl-tRNA synthetaseUniRule annotation, Ligase

    Keywords - Biological processi

    Protein biosynthesisUniRule annotation

    Keywords - Ligandi

    ATP-bindingUniRule annotation, Nucleotide-binding

    Enzyme and pathway databases

    BioCyciTAZO545695:GHPL-515-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Lysine--tRNA ligaseUniRule annotation (EC:6.1.1.6UniRule annotation)
    Alternative name(s):
    Lysyl-tRNA synthetaseUniRule annotation
    Gene namesi
    Name:lysSUniRule annotationImported
    Ordered Locus Names:TREAZ_1825Imported
    OrganismiTreponema azotonutricium (strain ATCC BAA-888 / DSM 13862 / ZAS-9)Imported
    Taxonomic identifieri545695 [NCBI]
    Taxonomic lineageiBacteriaSpirochaetesSpirochaetalesSpirochaetaceaeTreponema
    ProteomesiUP000009222: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    CytoplasmUniRule annotation

    Structurei

    3D structure databases

    ProteinModelPortaliF5YBY1.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Motif

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Motifi42 – 509"HIGH" regionUniRule annotation
    Motifi294 – 2985"KMSKS" regionUniRule annotation

    Sequence similaritiesi

    Belongs to the class-I aminoacyl-tRNA synthetase family.UniRule annotation

    Phylogenomic databases

    KOiK04566.
    OMAiWPARWSI.

    Family and domain databases

    Gene3Di1.10.10.350. 1 hit.
    2.30.30.300. 1 hit.
    3.40.50.620. 3 hits.
    HAMAPiMF_00177. Lys_tRNA_synth_class1.
    InterProiIPR008925. aa-tRNA-synth_I_codon-bd.
    IPR020751. aa-tRNA-synth_I_codon-bd_sub2.
    IPR001412. aa-tRNA-synth_I_CS.
    IPR002904. Lys-tRNA-ligase.
    IPR023386. Lys-tRNA-ligase_insertion.
    IPR014729. Rossmann-like_a/b/a_fold.
    [Graphical view]
    PfamiPF01921. tRNA-synt_1f. 1 hit.
    [Graphical view]
    SUPFAMiSSF48163. SSF48163. 1 hit.
    TIGRFAMsiTIGR00467. lysS_arch. 1 hit.
    PROSITEiPS00178. AA_TRNA_LIGASE_I. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F5YBY1-1 [UniParc]FASTAAdd to Basket

    « Hide

    MEKKNEASGA QASAHWADET AAKILREKGD KELYTCASGI TPSGTVHIGN    50
    FREIISTDLV VRALRDKGKK VRFIYSWDDY DVFRKVPKNM PQQEALNGHL 100
    RFPITMVPDP WGRDSSYARH HEVDIETVLP KVGVHPEFLY QAENYRSSKY 150
    AEGIRKALEH REALKNILDK FRDEEHKIQG EWWPVSAFCS ACNKDDTEID 200
    SWDGEWGVTY HCNSCGHKET ADIRTAKGIK LFWRIDWPMR WEYEKVDFEP 250
    AGKDHHSQGG SFDTAKHVCK DVYDWDAPVT FRYDFIGTKG LPGKMSSSSG 300
    NVITIEDVLN VYTPEVARYL FAGTRPNTEF TISFDLDVIK IYEDYDKTER 350
    IAFKAEPAKD EAVYQKERRI YELSQAAVTA EGKTKMPEIM PFQVPFRHLC 400
    NLIQIADGDI DKAIASIANL KPEQIPALKA RAACAKYWID ECAPEEFRFK 450
    LREPGETSDL ADNEKAAIKQ LRDEVISKID SFTDDKGCAE AIYKIAEAQG 500
    MEGKALFRAA YQALIGKDQG PRLANFLRSI NKDRLLGILK AY 542
    Length:542
    Mass (Da):61,709
    Last modified:July 27, 2011 - v1
    Checksum:i34935944DCC4AD3C
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001841 Genomic DNA. Translation: AEF80924.1.
    RefSeqiYP_004526094.1. NC_015577.1.

    Genome annotation databases

    EnsemblBacteriaiAEF80924; AEF80924; TREAZ_1825.
    GeneIDi10678131.
    KEGGitaz:TREAZ_1825.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001841 Genomic DNA. Translation: AEF80924.1 .
    RefSeqi YP_004526094.1. NC_015577.1.

    3D structure databases

    ProteinModelPortali F5YBY1.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEF80924 ; AEF80924 ; TREAZ_1825 .
    GeneIDi 10678131.
    KEGGi taz:TREAZ_1825.

    Phylogenomic databases

    KOi K04566.
    OMAi WPARWSI.

    Enzyme and pathway databases

    BioCyci TAZO545695:GHPL-515-MONOMER.

    Family and domain databases

    Gene3Di 1.10.10.350. 1 hit.
    2.30.30.300. 1 hit.
    3.40.50.620. 3 hits.
    HAMAPi MF_00177. Lys_tRNA_synth_class1.
    InterProi IPR008925. aa-tRNA-synth_I_codon-bd.
    IPR020751. aa-tRNA-synth_I_codon-bd_sub2.
    IPR001412. aa-tRNA-synth_I_CS.
    IPR002904. Lys-tRNA-ligase.
    IPR023386. Lys-tRNA-ligase_insertion.
    IPR014729. Rossmann-like_a/b/a_fold.
    [Graphical view ]
    Pfami PF01921. tRNA-synt_1f. 1 hit.
    [Graphical view ]
    SUPFAMi SSF48163. SSF48163. 1 hit.
    TIGRFAMsi TIGR00467. lysS_arch. 1 hit.
    PROSITEi PS00178. AA_TRNA_LIGASE_I. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of Treponema azotonutricium strain ZAS-9."
      Tetu S.G., Matson E., Ren Q., Seshadri R., Elbourne L., Hassan K.A., Durkin A., Radune D., Mohamoud Y., Shay R., Jin S., Zhang X., Lucey K., Ballor N.R., Ottesen E., Rosenthal R., Allen A., Leadbetter J.R., Paulsen I.T.
      Submitted (DEC-2009) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC BAA-888 / DSM 13862 / ZAS-9Imported.

    Entry informationi

    Entry nameiF5YBY1_TREAZ
    AccessioniPrimary (citable) accession number: F5YBY1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 27, 2011
    Last sequence update: July 27, 2011
    Last modified: October 1, 2014
    This is version 20 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3