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F5Y3D8 (F5Y3D8_RAMTT) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 23. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length376 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids By similarity. HAMAP-Rule MF_01201

Catalytic activity

L-alanine = D-alanine. HAMAP-Rule MF_01201 SAAS SAAS020622

Cofactor

Pyridoxal phosphate By similarity. HAMAP-Rule MF_01201 SAAS SAAS020622

Pathway

Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. HAMAP-Rule MF_01201

Sequence similarities

Belongs to the alanine racemase family. RuleBase RU004188 HAMAP-Rule MF_01201

Ontologies

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site471Proton acceptor; specific for D-alanine By similarity HAMAP-Rule MF_01201
Active site2681Proton acceptor; specific for L-alanine By similarity HAMAP-Rule MF_01201
Binding site1421Substrate By similarity HAMAP-Rule MF_01201
Binding site3161Substrate; via amide nitrogen By similarity HAMAP-Rule MF_01201

Amino acid modifications

Modified residue471N6-(pyridoxal phosphate)lysine By similarity HAMAP-Rule MF_01201

Sequences

Sequence LengthMass (Da)Tools
F5Y3D8 [UniParc].

Last modified July 27, 2011. Version 1.
Checksum: 9BFD8F3AA623FA86

FASTA37641,032
        10         20         30         40         50         60 
MPKSPRHPRD YPMPRPIQAT IHTESLRHNL ARMRRAAPDA RAWGVVKANA YGHGIERAFE 

        70         80         90        100        110        120 
GLRGADGFAL LDLQEAERVR ALGWRGPILL LEGVFEPRDL ELCSRLSLWH TVHCDEQIDM 

       130        140        150        160        170        180 
LAAHKTQLPH RVFLKMNSGM NRLGFAPHRY RAAWARLDAL PQVDEITLMT HFSDADTARG 

       190        200        210        220        230        240 
IGHQARVFAE TTRDLPGERT LGNSAAALRF GQEAAVRADW VRPGIAVYGS APDFPEHDIA 

       250        260        270        280        290        300 
HWGLQPTMTL ASRLIAVQQL RPGDTVGYGS SFTAEAPLRI GVVACGYADG YPRHGPTGTP 

       310        320        330        340        350        360 
VLVDGVRTRL VGRVSMDMVT VDLTPVPQAG FGSEATLWGR AANGAVLPID EVARAAGTVG 

       370 
YELMCAVAPR VPFAVD 

« Hide

References

[1]"Genome of the cyst-dividing bacterium Ramlibacter tataouinensis."
Barakat M., Ortet P., De Luca G., Jourlin-Castelli C., Ansaldi M., Py B., Fichant G., Coutinho P., Voulhoux R., Bastien O., Roy S., Marechal E., Henrissat B., Quentin Y., Noirot P., Filloux A., Mejean V., DuBow M., Barras F., Heulin T.
Submitted (JAN-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000245 Genomic DNA. Translation: AEG91225.1.
RefSeqYP_004617244.1. NC_015677.1.

3D structure databases

ProteinModelPortalF5Y3D8.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEG91225; AEG91225; Rta_01610.
GeneID10830717.
KEGGrta:Rta_01610.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01775.
OMAYGHGLER.

Enzyme and pathway databases

BioCycRTAT365046:GHCU-166-MONOMER.
UniPathwayUPA00042; UER00497.

Family and domain databases

Gene3D2.40.37.10. 1 hit.
3.20.20.10. 1 hit.
HAMAPMF_01201. Ala_racemase.
InterProIPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR020622. Ala_racemase_pyridoxalP-BS.
IPR029066. PLP-binding_barrel.
[Graphical view]
PfamPF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view]
PRINTSPR00992. ALARACEMASE.
SMARTSM01005. Ala_racemase_C. 1 hit.
[Graphical view]
SUPFAMSSF50621. SSF50621. 1 hit.
SSF51419. SSF51419. 1 hit.
TIGRFAMsTIGR00492. alr. 1 hit.
PROSITEPS00395. ALANINE_RACEMASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF5Y3D8_RAMTT
AccessionPrimary (citable) accession number: F5Y3D8
Entry history
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: July 9, 2014
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)