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F5Y3D8

- F5Y3D8_RAMTT

UniProt

F5Y3D8 - F5Y3D8_RAMTT

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Protein

Alanine racemase

Gene
alr2, Rta_01610
Organism
Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310)
Status
Unreviewed - Annotation score: 2 out of 5 - Experimental evidence at protein leveli

Functioni

Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids By similarity.UniRule annotation

Catalytic activityi

L-alanine = D-alanine.UniRule annotationSAAS annotations

Cofactori

Pyridoxal phosphate By similarity.UniRule annotationSAAS annotations

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei47 – 471Proton acceptor; specific for D-alanine By similarityUniRule annotation
Binding sitei142 – 1421Substrate By similarityUniRule annotation
Active sitei268 – 2681Proton acceptor; specific for L-alanine By similarityUniRule annotation
Binding sitei316 – 3161Substrate; via amide nitrogen By similarityUniRule annotation

GO - Molecular functioni

  1. alanine racemase activity Source: UniProtKB-HAMAP
  2. pyridoxal phosphate binding Source: UniProtKB-HAMAP

GO - Biological processi

  1. D-alanine biosynthetic process Source: UniProtKB-UniPathway
Complete GO annotation...

Keywords - Molecular functioni

IsomeraseUniRule annotationSAAS annotations

Keywords - Ligandi

Pyridoxal phosphateUniRule annotationSAAS annotations

Enzyme and pathway databases

BioCyciRTAT365046:GHCU-166-MONOMER.
UniPathwayiUPA00042; UER00497.

Names & Taxonomyi

Protein namesi
Recommended name:
Alanine racemaseUniRule annotation (EC:5.1.1.1UniRule annotation)
Gene namesi
Name:alr2Imported
Ordered Locus Names:Rta_01610Imported
OrganismiRamlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310)Imported
Taxonomic identifieri365046 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeRamlibacter
ProteomesiUP000008385: Chromosome

PTM / Processingi

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei47 – 471N6-(pyridoxal phosphate)lysine By similarityUniRule annotation

Structurei

3D structure databases

ProteinModelPortaliF5Y3D8.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

KOiK01775.
OMAiYGHGLER.

Family and domain databases

Gene3Di2.40.37.10. 1 hit.
3.20.20.10. 1 hit.
HAMAPiMF_01201. Ala_racemase.
InterProiIPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR020622. Ala_racemase_pyridoxalP-BS.
IPR029066. PLP-binding_barrel.
[Graphical view]
PfamiPF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view]
PRINTSiPR00992. ALARACEMASE.
SMARTiSM01005. Ala_racemase_C. 1 hit.
[Graphical view]
SUPFAMiSSF50621. SSF50621. 1 hit.
SSF51419. SSF51419. 1 hit.
TIGRFAMsiTIGR00492. alr. 1 hit.
PROSITEiPS00395. ALANINE_RACEMASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F5Y3D8-1 [UniParc]FASTAAdd to Basket

« Hide

MPKSPRHPRD YPMPRPIQAT IHTESLRHNL ARMRRAAPDA RAWGVVKANA    50
YGHGIERAFE GLRGADGFAL LDLQEAERVR ALGWRGPILL LEGVFEPRDL 100
ELCSRLSLWH TVHCDEQIDM LAAHKTQLPH RVFLKMNSGM NRLGFAPHRY 150
RAAWARLDAL PQVDEITLMT HFSDADTARG IGHQARVFAE TTRDLPGERT 200
LGNSAAALRF GQEAAVRADW VRPGIAVYGS APDFPEHDIA HWGLQPTMTL 250
ASRLIAVQQL RPGDTVGYGS SFTAEAPLRI GVVACGYADG YPRHGPTGTP 300
VLVDGVRTRL VGRVSMDMVT VDLTPVPQAG FGSEATLWGR AANGAVLPID 350
EVARAAGTVG YELMCAVAPR VPFAVD 376
Length:376
Mass (Da):41,032
Last modified:July 27, 2011 - v1
Checksum:i9BFD8F3AA623FA86
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000245 Genomic DNA. Translation: AEG91225.1.
RefSeqiYP_004617244.1. NC_015677.1.

Genome annotation databases

EnsemblBacteriaiAEG91225; AEG91225; Rta_01610.
GeneIDi10830717.
KEGGirta:Rta_01610.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000245 Genomic DNA. Translation: AEG91225.1 .
RefSeqi YP_004617244.1. NC_015677.1.

3D structure databases

ProteinModelPortali F5Y3D8.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AEG91225 ; AEG91225 ; Rta_01610 .
GeneIDi 10830717.
KEGGi rta:Rta_01610.

Phylogenomic databases

KOi K01775.
OMAi YGHGLER.

Enzyme and pathway databases

UniPathwayi UPA00042 ; UER00497 .
BioCyci RTAT365046:GHCU-166-MONOMER.

Family and domain databases

Gene3Di 2.40.37.10. 1 hit.
3.20.20.10. 1 hit.
HAMAPi MF_01201. Ala_racemase.
InterProi IPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR020622. Ala_racemase_pyridoxalP-BS.
IPR029066. PLP-binding_barrel.
[Graphical view ]
Pfami PF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view ]
PRINTSi PR00992. ALARACEMASE.
SMARTi SM01005. Ala_racemase_C. 1 hit.
[Graphical view ]
SUPFAMi SSF50621. SSF50621. 1 hit.
SSF51419. SSF51419. 1 hit.
TIGRFAMsi TIGR00492. alr. 1 hit.
PROSITEi PS00395. ALANINE_RACEMASE. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Genome of the cyst-dividing bacterium Ramlibacter tataouinensis."
    Barakat M., Ortet P., De Luca G., Jourlin-Castelli C., Ansaldi M., Py B., Fichant G., Coutinho P., Voulhoux R., Bastien O., Roy S., Marechal E., Henrissat B., Quentin Y., Noirot P., Filloux A., Mejean V., DuBow M., Barras F., Heulin T.
    Submitted (JAN-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310.

Entry informationi

Entry nameiF5Y3D8_RAMTT
AccessioniPrimary (citable) accession number: F5Y3D8
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: July 9, 2014
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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