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F5XWS4 (F5XWS4_RAMTT) Unreviewed, UniProtKB/TrEMBL

Last modified October 16, 2013. Version 11. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Rta_31080 EMBL AEG94218.1
OrganismRamlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) [Complete proteome] [HAMAP] EMBL AEG94218.1
Taxonomic identifier365046 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeRamlibacter

Protein attributes

Sequence length590 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
F5XWS4 [UniParc].

Last modified July 27, 2011. Version 1.
Checksum: DCD7C9A431BBB2F6

FASTA59065,277
        10         20         30         40         50         60 
MKLFSRLFAE LDATTSTNAK VEALQRYFAQ AAPRDAAWAV YFLAGGKPRQ VAPMAVLAEL 

        70         80         90        100        110        120 
ACQEARIAPW LFDECYQAVG DLAETIAHVL PRGGETSDLG LADWVEQRLL PLRGLPPQEI 

       130        140        150        160        170        180 
AQRVRGYWAE LDTQGRFLLT KLVGGGFRVG VSKLLVQRAL AAHGGVDAKQ VAQRMMGYTD 

       190        200        210        220        230        240 
GRAQPSAERL LALIAQAEEG AAQLRDEGQP YPFFLAHQLD APAEVFQAKL GPVADWQVEW 

       250        260        270        280        290        300 
KYDGIRGQIV KRGGAVWLWS RGEELVTDRF PEIVAMAQPL PDGTVLDGEI MVWKDEPVEP 

       310        320        330        340        350        360 
PGTVIGRPAP FSLLQQRIGR KTLTKKVLQE APVTFMAYDL LEQGGQDIRA VPQRERRARL 

       370        380        390        400        410        420 
EALLDGTPFK LSPIEHASSW LEYAERRRQS RERGVEGFML KRLDAAYGTG RTKADGLWWK 

       430        440        450        460        470        480 
WKIDPMTIDC VLVYAQAGHG RRASVYTDYT FAVWSREPEG QAEADAAIAA MSAAGPPQGA 

       490        500        510        520        530        540 
KAPPGGSEPR EAGSVGALKL VAFAKAYSGL TDEEFRQVDA VIRRTTLEKF GPVRSVRPTL 

       550        560        570        580        590 
VFELGFEGIN RSPRHKSGIA VRFPRMLRIR HDKPLHEANT LQDLESLLNL 

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References

[1]"Genome of the cyst-dividing bacterium Ramlibacter tataouinensis."
Barakat M., Ortet P., De Luca G., Jourlin-Castelli C., Ansaldi M., Py B., Fichant G., Coutinho P., Voulhoux R., Bastien O., Roy S., Marechal E., Henrissat B., Quentin Y., Noirot P., Filloux A., Mejean V., DuBow M., Barras F., Heulin T.
Submitted (JAN-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000245 Genomic DNA. Translation: AEG94218.1.
RefSeqYP_004620237.1. NC_015677.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEG94218; AEG94218; Rta_31080.
GeneID10833742.
KEGGrta:Rta_31080.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.
OMAGQPYPFF.

Enzyme and pathway databases

BioCycRTAT365046:GHCU-3191-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 2 hits.
InterProIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 2 hits.
TIGRFAMsTIGR04120. DNA_lig_bact. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF5XWS4_RAMTT
AccessionPrimary (citable) accession number: F5XWS4
Entry history
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: October 16, 2013
This is version 11 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)