Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

F5XWS4

- F5XWS4_RAMTT

UniProt

F5XWS4 - F5XWS4_RAMTT

Protein
Submitted name:

ATP-dependent DNA ligase-like protein

Gene

Rta_31080

Organism
Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 13 (01 Oct 2014)
      Sequence version 1 (27 Jul 2011)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciRTAT365046:GHCU-3191-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligase-like proteinImported
    Gene namesi
    Ordered Locus Names:Rta_31080Imported
    OrganismiRamlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310)Imported
    Taxonomic identifieri365046 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeRamlibacter
    ProteomesiUP000008385: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.
    OMAiRVWLWSR.

    Family and domain databases

    Gene3Di2.40.50.140. 2 hits.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 2 hits.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F5XWS4-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKLFSRLFAE LDATTSTNAK VEALQRYFAQ AAPRDAAWAV YFLAGGKPRQ    50
    VAPMAVLAEL ACQEARIAPW LFDECYQAVG DLAETIAHVL PRGGETSDLG 100
    LADWVEQRLL PLRGLPPQEI AQRVRGYWAE LDTQGRFLLT KLVGGGFRVG 150
    VSKLLVQRAL AAHGGVDAKQ VAQRMMGYTD GRAQPSAERL LALIAQAEEG 200
    AAQLRDEGQP YPFFLAHQLD APAEVFQAKL GPVADWQVEW KYDGIRGQIV 250
    KRGGAVWLWS RGEELVTDRF PEIVAMAQPL PDGTVLDGEI MVWKDEPVEP 300
    PGTVIGRPAP FSLLQQRIGR KTLTKKVLQE APVTFMAYDL LEQGGQDIRA 350
    VPQRERRARL EALLDGTPFK LSPIEHASSW LEYAERRRQS RERGVEGFML 400
    KRLDAAYGTG RTKADGLWWK WKIDPMTIDC VLVYAQAGHG RRASVYTDYT 450
    FAVWSREPEG QAEADAAIAA MSAAGPPQGA KAPPGGSEPR EAGSVGALKL 500
    VAFAKAYSGL TDEEFRQVDA VIRRTTLEKF GPVRSVRPTL VFELGFEGIN 550
    RSPRHKSGIA VRFPRMLRIR HDKPLHEANT LQDLESLLNL 590
    Length:590
    Mass (Da):65,277
    Last modified:July 27, 2011 - v1
    Checksum:iDCD7C9A431BBB2F6
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000245 Genomic DNA. Translation: AEG94218.1.
    RefSeqiYP_004620237.1. NC_015677.1.

    Genome annotation databases

    EnsemblBacteriaiAEG94218; AEG94218; Rta_31080.
    GeneIDi10833742.
    KEGGirta:Rta_31080.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000245 Genomic DNA. Translation: AEG94218.1 .
    RefSeqi YP_004620237.1. NC_015677.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEG94218 ; AEG94218 ; Rta_31080 .
    GeneIDi 10833742.
    KEGGi rta:Rta_31080.

    Phylogenomic databases

    KOi K01971.
    OMAi RVWLWSR.

    Enzyme and pathway databases

    BioCyci RTAT365046:GHCU-3191-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 2 hits.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 2 hits.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome of the cyst-dividing bacterium Ramlibacter tataouinensis."
      Barakat M., Ortet P., De Luca G., Jourlin-Castelli C., Ansaldi M., Py B., Fichant G., Coutinho P., Voulhoux R., Bastien O., Roy S., Marechal E., Henrissat B., Quentin Y., Noirot P., Filloux A., Mejean V., DuBow M., Barras F., Heulin T.
      Submitted (JAN-2006) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310Imported.

    Entry informationi

    Entry nameiF5XWS4_RAMTT
    AccessioniPrimary (citable) accession number: F5XWS4
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 27, 2011
    Last sequence update: July 27, 2011
    Last modified: October 1, 2014
    This is version 13 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3