F5XWS4 (F5XWS4_RAMTT) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP-dependent DNA ligase-like protein EMBL AEG94218.1

Gene names

Ordered Locus Names:

Rta_31080

Organism

Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) [Complete proteome] [HAMAP] EMBL AEG94218.1

Taxonomic identifier

365046 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Comamonadaceae › Ramlibacter › Ramlibacter tataouinensis

Protein attributes

Sequence length	590 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL AEG94218.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F5XWS4 [UniParc]. Last modified July 27, 2011. Version 1. Checksum: DCD7C9A431BBB2F6	FASTA	590	65,277
	10 20 30 40 50 60 MKLFSRLFAE LDATTSTNAK VEALQRYFAQ AAPRDAAWAV YFLAGGKPRQ VAPMAVLAEL 70 80 90 100 110 120 ACQEARIAPW LFDECYQAVG DLAETIAHVL PRGGETSDLG LADWVEQRLL PLRGLPPQEI 130 140 150 160 170 180 AQRVRGYWAE LDTQGRFLLT KLVGGGFRVG VSKLLVQRAL AAHGGVDAKQ VAQRMMGYTD 190 200 210 220 230 240 GRAQPSAERL LALIAQAEEG AAQLRDEGQP YPFFLAHQLD APAEVFQAKL GPVADWQVEW 250 260 270 280 290 300 KYDGIRGQIV KRGGAVWLWS RGEELVTDRF PEIVAMAQPL PDGTVLDGEI MVWKDEPVEP 310 320 330 340 350 360 PGTVIGRPAP FSLLQQRIGR KTLTKKVLQE APVTFMAYDL LEQGGQDIRA VPQRERRARL 370 380 390 400 410 420 EALLDGTPFK LSPIEHASSW LEYAERRRQS RERGVEGFML KRLDAAYGTG RTKADGLWWK 430 440 450 460 470 480 WKIDPMTIDC VLVYAQAGHG RRASVYTDYT FAVWSREPEG QAEADAAIAA MSAAGPPQGA 490 500 510 520 530 540 KAPPGGSEPR EAGSVGALKL VAFAKAYSGL TDEEFRQVDA VIRRTTLEKF GPVRSVRPTL 550 560 570 580 590 VFELGFEGIN RSPRHKSGIA VRFPRMLRIR HDKPLHEANT LQDLESLLNL

References

[1]

"Genome of the cyst-dividing bacterium Ramlibacter tataouinensis." Barakat M., Ortet P., De Luca G., Jourlin-Castelli C., Ansaldi M., Py B., Fichant G., Coutinho P., Voulhoux R., Bastien O., Roy S., Marechal E., Henrissat B., Quentin Y., Noirot P., Filloux A., Mejean V., DuBow M., Barras F., Heulin T. Submitted (JAN-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000245 Genomic DNA. Translation: AEG94218.1.
RefSeq	YP_004620237.1. NC_015677.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AEG94218; AEG94218; Rta_31080.
GeneID	10833742.
KEGG	rta:Rta_31080.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01971.
Enzyme and pathway databases
BioCyc	RTAT365046:GHCU-3191-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 2 hits.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

F5XWS4_RAMTT

Accession

Primary (citable) accession number: F5XWS4

Entry history

Integrated into UniProtKB/TrEMBL:	July 27, 2011
Last sequence update:	July 27, 2011
Last modified:	April 3, 2013
This is version 10 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)