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Protein
Submitted name:

ATP-dependent DNA ligase-like protein

Gene

Rta_31080

Organism
Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciRTAT365046:GHCU-3191-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase-like proteinImported
Gene namesi
Ordered Locus Names:Rta_31080Imported
OrganismiRamlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310)Imported
Taxonomic identifieri365046 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeRamlibacter
ProteomesiUP000008385: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.
OMAiGQPYPFF.

Family and domain databases

Gene3Di2.40.50.140. 2 hits.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 2 hits.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F5XWS4-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKLFSRLFAE LDATTSTNAK VEALQRYFAQ AAPRDAAWAV YFLAGGKPRQ
60 70 80 90 100
VAPMAVLAEL ACQEARIAPW LFDECYQAVG DLAETIAHVL PRGGETSDLG
110 120 130 140 150
LADWVEQRLL PLRGLPPQEI AQRVRGYWAE LDTQGRFLLT KLVGGGFRVG
160 170 180 190 200
VSKLLVQRAL AAHGGVDAKQ VAQRMMGYTD GRAQPSAERL LALIAQAEEG
210 220 230 240 250
AAQLRDEGQP YPFFLAHQLD APAEVFQAKL GPVADWQVEW KYDGIRGQIV
260 270 280 290 300
KRGGAVWLWS RGEELVTDRF PEIVAMAQPL PDGTVLDGEI MVWKDEPVEP
310 320 330 340 350
PGTVIGRPAP FSLLQQRIGR KTLTKKVLQE APVTFMAYDL LEQGGQDIRA
360 370 380 390 400
VPQRERRARL EALLDGTPFK LSPIEHASSW LEYAERRRQS RERGVEGFML
410 420 430 440 450
KRLDAAYGTG RTKADGLWWK WKIDPMTIDC VLVYAQAGHG RRASVYTDYT
460 470 480 490 500
FAVWSREPEG QAEADAAIAA MSAAGPPQGA KAPPGGSEPR EAGSVGALKL
510 520 530 540 550
VAFAKAYSGL TDEEFRQVDA VIRRTTLEKF GPVRSVRPTL VFELGFEGIN
560 570 580 590
RSPRHKSGIA VRFPRMLRIR HDKPLHEANT LQDLESLLNL
Length:590
Mass (Da):65,277
Last modified:July 27, 2011 - v1
Checksum:iDCD7C9A431BBB2F6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000245 Genomic DNA. Translation: AEG94218.1.
RefSeqiYP_004620237.1. NC_015677.1.

Genome annotation databases

EnsemblBacteriaiAEG94218; AEG94218; Rta_31080.
GeneIDi10833742.
KEGGirta:Rta_31080.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000245 Genomic DNA. Translation: AEG94218.1.
RefSeqiYP_004620237.1. NC_015677.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEG94218; AEG94218; Rta_31080.
GeneIDi10833742.
KEGGirta:Rta_31080.

Phylogenomic databases

KOiK01971.
OMAiGQPYPFF.

Enzyme and pathway databases

BioCyciRTAT365046:GHCU-3191-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 2 hits.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 2 hits.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome of the cyst-dividing bacterium Ramlibacter tataouinensis."
    Barakat M., Ortet P., De Luca G., Jourlin-Castelli C., Ansaldi M., Py B., Fichant G., Coutinho P., Voulhoux R., Bastien O., Roy S., Marechal E., Henrissat B., Quentin Y., Noirot P., Filloux A., Mejean V., DuBow M., Barras F., Heulin T.
    Submitted (JAN-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310Imported.

Entry informationi

Entry nameiF5XWS4_RAMTT
AccessioniPrimary (citable) accession number: F5XWS4
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: January 7, 2015
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.