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F5XWS4

- F5XWS4_RAMTT

UniProt

F5XWS4 - F5XWS4_RAMTT

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Protein
Submitted name:

ATP-dependent DNA ligase-like protein

Gene
Rta_31080
Organism
Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciRTAT365046:GHCU-3191-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase-like proteinImported
Gene namesi
Ordered Locus Names:Rta_31080Imported
OrganismiRamlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310)Imported
Taxonomic identifieri365046 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeRamlibacter
ProteomesiUP000008385: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.
OMAiRVWLWSR.

Family and domain databases

Gene3Di2.40.50.140. 2 hits.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 2 hits.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F5XWS4-1 [UniParc]FASTAAdd to Basket

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MKLFSRLFAE LDATTSTNAK VEALQRYFAQ AAPRDAAWAV YFLAGGKPRQ    50
VAPMAVLAEL ACQEARIAPW LFDECYQAVG DLAETIAHVL PRGGETSDLG 100
LADWVEQRLL PLRGLPPQEI AQRVRGYWAE LDTQGRFLLT KLVGGGFRVG 150
VSKLLVQRAL AAHGGVDAKQ VAQRMMGYTD GRAQPSAERL LALIAQAEEG 200
AAQLRDEGQP YPFFLAHQLD APAEVFQAKL GPVADWQVEW KYDGIRGQIV 250
KRGGAVWLWS RGEELVTDRF PEIVAMAQPL PDGTVLDGEI MVWKDEPVEP 300
PGTVIGRPAP FSLLQQRIGR KTLTKKVLQE APVTFMAYDL LEQGGQDIRA 350
VPQRERRARL EALLDGTPFK LSPIEHASSW LEYAERRRQS RERGVEGFML 400
KRLDAAYGTG RTKADGLWWK WKIDPMTIDC VLVYAQAGHG RRASVYTDYT 450
FAVWSREPEG QAEADAAIAA MSAAGPPQGA KAPPGGSEPR EAGSVGALKL 500
VAFAKAYSGL TDEEFRQVDA VIRRTTLEKF GPVRSVRPTL VFELGFEGIN 550
RSPRHKSGIA VRFPRMLRIR HDKPLHEANT LQDLESLLNL 590
Length:590
Mass (Da):65,277
Last modified:July 27, 2011 - v1
Checksum:iDCD7C9A431BBB2F6
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000245 Genomic DNA. Translation: AEG94218.1.
RefSeqiYP_004620237.1. NC_015677.1.

Genome annotation databases

EnsemblBacteriaiAEG94218; AEG94218; Rta_31080.
GeneIDi10833742.
KEGGirta:Rta_31080.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000245 Genomic DNA. Translation: AEG94218.1 .
RefSeqi YP_004620237.1. NC_015677.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AEG94218 ; AEG94218 ; Rta_31080 .
GeneIDi 10833742.
KEGGi rta:Rta_31080.

Phylogenomic databases

KOi K01971.
OMAi RVWLWSR.

Enzyme and pathway databases

BioCyci RTAT365046:GHCU-3191-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 2 hits.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 2 hits.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Genome of the cyst-dividing bacterium Ramlibacter tataouinensis."
    Barakat M., Ortet P., De Luca G., Jourlin-Castelli C., Ansaldi M., Py B., Fichant G., Coutinho P., Voulhoux R., Bastien O., Roy S., Marechal E., Henrissat B., Quentin Y., Noirot P., Filloux A., Mejean V., DuBow M., Barras F., Heulin T.
    Submitted (JAN-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310.

Entry informationi

Entry nameiF5XWS4_RAMTT
AccessioniPrimary (citable) accession number: F5XWS4
Entry historyi
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: May 14, 2014
This is version 12 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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