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F5XWN9 (F5XWN9_RAMTT) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 15. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
Glycerol-3-phosphate dehydrogenase [NAD(P)+] HAMAP-Rule MF_00394

EC=1.1.1.94 HAMAP-Rule MF_00394
Alternative name(s):
NAD(P)H-dependent glycerol-3-phosphate dehydrogenase HAMAP-Rule MF_00394
Gene names
Name:gpsA HAMAP-Rule MF_00394 EMBL AEG94183.1
Ordered Locus Names:Rta_30730 EMBL AEG94183.1
OrganismRamlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) [Complete proteome] [HAMAP] EMBL AEG94183.1
Taxonomic identifier365046 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeRamlibacter

Protein attributes

Sequence length331 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Ontologies

Keywords
   Biological processLipid biosynthesis
Lipid metabolism
Phospholipid biosynthesis RuleBase RU004280 HAMAP-Rule MF_00394 SAAS SAAS011128
Phospholipid metabolism
   Cellular componentCytoplasm HAMAP-Rule MF_00394 SAAS SAAS011128
   LigandNAD HAMAP-Rule MF_00394 RuleBase RU000437 SAAS SAAS011128
   Molecular functionOxidoreductase HAMAP-Rule MF_00394 RuleBase RU000437 SAAS SAAS011128
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

glycerol-3-phosphate biosynthetic process

Inferred from electronic annotation. Source: UniProtKB-HAMAP

glycerol-3-phosphate catabolic process

Inferred from electronic annotation. Source: InterPro

glycerophospholipid metabolic process

Inferred from electronic annotation. Source: UniProtKB-UniPathway

phospholipid biosynthetic process

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentglycerol-3-phosphate dehydrogenase complex

Inferred from electronic annotation. Source: InterPro

   Molecular_functionNAD binding

Inferred from electronic annotation. Source: InterPro

glycerol-3-phosphate dehydrogenase [NAD(P)+] activity

Inferred from electronic annotation. Source: UniProtKB-HAMAP

glycerol-3-phosphate dehydrogenase [NAD+] activity

Inferred from electronic annotation. Source: UniProtKB-EC

glycerol-3-phosphate dehydrogenase [NADP+] activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding3 – 86NAD By similarity HAMAP-Rule MF_00394
Region253 – 2542Substrate binding By similarity PIRSR PIRSR000114-2 HAMAP-Rule MF_00394

Sites

Active site1891Proton acceptor By similarity HAMAP-Rule MF_00394 PIRSR PIRSR000114-1
Binding site1011NAD; via amide nitrogen By similarity HAMAP-Rule MF_00394
Binding site1011Substrate By similarity PIRSR PIRSR000114-2 HAMAP-Rule MF_00394
Binding site1381NAD; via amide nitrogen By similarity HAMAP-Rule MF_00394
Binding site2531NAD By similarity HAMAP-Rule MF_00394
Binding site2791NAD By similarity HAMAP-Rule MF_00394

Sequences

Sequence LengthMass (Da)Tools
F5XWN9 [UniParc].

Last modified July 27, 2011. Version 1.
Checksum: 5BB30F2CF6299A87

FASTA33133,893
        10         20         30         40         50         60 
MLGAGAWGTA LAVSAAPRHA LTLWLRDAAQ AQALRRDGEN RRYLPGVALP PGLQVRDEAP 

        70         80         90        100        110        120 
DRLLALAQAH DLVVVATPMA GLRGMLQALR RCPAPVTWLC KGFEAADSGQ PQGLLGHEIQ 

       130        140        150        160        170        180 
AAVAPGLAAG ALSGPSFAQE VARGQPTALV AASAHAAVRD ALVAAFHGPA LRVYANDDLA 

       190        200        210        220        230        240 
GVEVGGAVKN VLAIATGLCD GLQLGLNARA ALVTRGLAEM TRLGVALGAR PDTFMGLSGL 

       250        260        270        280        290        300 
GDLVLTATGD LSRNRKVGLL MAQGRTLQQA VDSLGHVAEG VYCARTVVER AGRLGVDMPI 

       310        320        330 
ARAVVALLDG QLQPGQAVTT LMGREPAAEQ G 

« Hide

References

[1]"Genome of the cyst-dividing bacterium Ramlibacter tataouinensis."
Barakat M., Ortet P., De Luca G., Jourlin-Castelli C., Ansaldi M., Py B., Fichant G., Coutinho P., Voulhoux R., Bastien O., Roy S., Marechal E., Henrissat B., Quentin Y., Noirot P., Filloux A., Mejean V., DuBow M., Barras F., Heulin T.
Submitted (JAN-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000245 Genomic DNA. Translation: AEG94183.1.
RefSeqYP_004620202.1. NC_015677.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEG94183; AEG94183; Rta_30730.
GeneID10833707.
KEGGrta:Rta_30730.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK00057.
OMATLCHAMR.

Enzyme and pathway databases

BioCycRTAT365046:GHCU-3156-MONOMER.
UniPathwayUPA00940.

Family and domain databases

Gene3D1.10.1040.10. 1 hit.
3.40.50.720. 1 hit.
HAMAPMF_00394. NAD_Glyc3P_dehydrog.
InterProIPR008927. 6-PGluconate_DH_C-like.
IPR013328. DH_multihelical.
IPR006168. G3P_DH_NAD-dep.
IPR006109. G3P_DH_NAD-dep_C.
IPR011128. G3P_DH_NAD-dep_N.
IPR016040. NAD(P)-bd_dom.
[Graphical view]
PANTHERPTHR11728. PTHR11728. 1 hit.
PfamPF07479. NAD_Gly3P_dh_C. 1 hit.
PF01210. NAD_Gly3P_dh_N. 1 hit.
[Graphical view]
PIRSFPIRSF000114. Glycerol-3-P_dh. 1 hit.
PRINTSPR00077. GPDHDRGNASE.
SUPFAMSSF48179. SSF48179. 1 hit.
PROSITEPS00957. NAD_G3PDH. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF5XWN9_RAMTT
AccessionPrimary (citable) accession number: F5XWN9
Entry history
Integrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: February 19, 2014
This is version 15 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)