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F5H8W5 (F5H8W5_CRYNB) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 16. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length803 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).

Sequence similarities

Belongs to the ATP-dependent DNA ligase family. RuleBase RU004196

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.

Sequences

Sequence LengthMass (Da)Tools
F5H8W5 [UniParc].

Last modified June 28, 2011. Version 1.
Checksum: 8F400926CE1B836A

FASTA80389,050
        10         20         30         40         50         60 
MSDIEYPVKS NIRKKRTVIL SDDEDEGLGP SVIKEQVSSP KHSHLSDEET EPPRKVAKTS 

        70         80         90        100        110        120 
SKVAPIFAPK EKKEKPSPKT SSALSKAPAK KIEVKSKGEK PLASIFTKAT RKPEPKDDDE 

       130        140        150        160        170        180 
MSDEVKQKGK DEEEEDEIYD EVEDKQEGEA AVKLASIFTK NQKSVPVADK GWKDGEAVPY 

       190        200        210        220        230        240 
PALVSTFEKI EATTKRLEIL EFLTQFLLVV AKRDTATDAK GSMLLKVVYL CINRLCPDYM 

       250        260        270        280        290        300 
GIELGIGESL LIKAIAESTG RAMPKIKEDL KKEGDLGKVA MNSRNTQSTM FKPKPLTVPY 

       310        320        330        340        350        360 
VFQCLTDIAK ASGNASQAKK VGIIKKLLAA CQGTEAKFII RSLEGKLRIG LADKTVVVAL 

       370        380        390        400        410        420 
AHAIVLKTIG DKKPPPEKLA IMLEQGAETV KAVYSELPSY DLVIPALLQG GVEGLRERCK 

       430        440        450        460        470        480 
LTPGVPLKPM LAKPTKAITE VLDRFEGKEF TCEYKYDGER AQVHLLEDGT ISVFSRNSEN 

       490        500        510        520        530        540 
MSAKYPDLVD QIPRSMKPTA KTFVIDAEAV AYDLETKKIL PFQDLSRRKR KDVKAEDITV 

       550        560        570        580        590        600 
RVHIFAFDLL YLNGESLLAK ELKERRQLLQ EHFQPVESEF AFAKSSDGST TEEIQALLEE 

       610        620        630        640        650        660 
SVKDGCEGLM VKMLTSESST YEPSRRSMNW LKLKKDYLSG VGDSLDLVVV GAYHGKGKRT 

       670        680        690        700        710        720 
AVYGAFLLAC YDPDSEHYQT ICKIGTGFSE EILTQFYELL KPLELEVVRG DIEVGGAKPD 

       730        740        750        760        770        780 
VWFEPRVVWE VLTADLSLSP IYAAAHGVID SRGISLRFPR FIRIRDDKSA DEATTAEQVS 

       790        800 
EFYQRQISAG GKKGAGADVD DFW 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AAEY01000042 Genomic DNA. Translation: EAL19299.1.
RefSeqXP_773946.1. XM_768853.1.

3D structure databases

ProteinModelPortalF5H8W5.
SMRF5H8W5. Positions 164-787.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4937926.
KEGGcnb:CNBH3980.

Phylogenomic databases

KOK10747.
OrthoDBEOG7TXKRG.

Family and domain databases

Gene3D1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
HAMAPMF_00407. DNA_ligase.
InterProIPR022865. DNA_ligae_ATP-dep_bac/arc.
IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR00574. dnl1. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF5H8W5_CRYNB
AccessionPrimary (citable) accession number: F5H8W5
Entry history
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: February 19, 2014
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)