F5H315 (F5H315_HUMAN) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Pre-mRNA-splicing factor SYF1 Ensembl ENSP00000438225

Gene names

Name:

XAB2 Ensembl ENSP00000438225

Organism

Homo sapiens (Human) [Reference proteome] Ensembl ENSP00000438225

Taxonomic identifier

9606 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Primates › Haplorrhini › Simiiformes › Catarrhini › Hominoidea › Hominidae › Homininae › Homo

Protein attributes

Sequence length	852 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSP00000438225

Ontologies

Keywords
Domain	Repeat SAAS SAAS003107
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	RNA processing Inferred from electronic annotation. Source: InterPro blastocyst development Inferred from electronic annotation. Source: Compara
Cellular_component	intracellular Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F5H315 [UniParc]. Last modified June 28, 2011. Version 1. Checksum: 18CE278CFD00E671	FASTA	852	99,680
	10 20 30 40 50 60 MARLSRPERP DLVFEEEDLP YEEEIMRNQF SVKCWLRYIE FKQGAPKPRL NQLYERALKL 70 80 90 100 110 120 LPCSYKLWYR YLKARRAQVK HRCVTDPAYE DVNNCHERAF VFMHKMPRLW LDYCQFLMDQ 130 140 150 160 170 180 GRVTHTRRTF DRALRALPIT QHSRIWPLYL RFLRSHPLPE TAVRGYRRFL KLSPESAEEY 190 200 210 220 230 240 IEYLKSSDRL DEAAQRLATV VNDERFVSKA GKSNYQLWHE LCDLISQNPD KVQSLNVDAI 250 260 270 280 290 300 IRGGLTRFTD QLGKLWCSLA DYYIRSGHFE KARDVYEEAI RTVMTVRDFT QVFDSYAQFE 310 320 330 340 350 360 ESMIAAKMET ASELGREEED DVDLELRLAR FEQLISRRPL LLNSVLLRQN PHHVHEWHKR 370 380 390 400 410 420 VALHQGRPRE IINTYTEAVQ TVDPFKATGK PHTLWVAFAK FYEDNGQLDD ARVILEKATK 430 440 450 460 470 480 VNFKQVDDLA SVWCQCGELE LRHENYDEAL RLLRKATALP ARRAEYFDGS EPVQNRVYKS 490 500 510 520 530 540 LKVWSMLADL EESLGTFQST KAVYDRILDL RIATPQIVIN YAMFLEEHKY FEESFKAYER 550 560 570 580 590 600 GISLFKWPNV SDIWSTYLTK FIARYGGRKL ERARDLFEQA LDGCPPKYAK TLYLLYAQLE 610 620 630 640 650 660 EEWGLARHAM AVYERATRAV EPAQQYDMFN IYIKRAAEIY GVTHTRGIYQ KAIEVLSDEH 670 680 690 700 710 720 AREMCLRFAD MECKLGEIDR ARAIYSFCSQ ICDPRTTGAF WQTWKDFEVR HGNEDTIKEM 730 740 750 760 770 780 LRIRRSVQAT YNTQVNFMAS QMLKVSGSAT GTVSDLAPGQ SGMDDMKLLE QRAEQLAAEA 790 800 810 820 830 840 ERDQPLRAQS KILFVRSDAS REELAELAQQ VNPEEIQLGE DEDEDEMDLE PNEVRLEQQS 850 VPAAVFGSLK ED

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The DNA sequence and biology of human chromosome 19." Grimwood J., Gordon L.A., Olsen A.S., Terry A., Schmutz J., Lamerdin J.E., Hellsten U., Goodstein D., Couronne O., Tran-Gyamfi M., Aerts A., Altherr M., Ashworth L., Bajorek E., Black S., Branscomb E., Caenepeel S., Carrano A.V. , Caoile C., Chan Y.M., Christensen M., Cleland C.A., Copeland A., Dalin E., Dehal P., Denys M., Detter J.C., Escobar J., Flowers D., Fotopulos D., Garcia C., Georgescu A.M., Glavina T., Gomez M., Gonzales E., Groza M., Hammon N., Hawkins T., Haydu L., Ho I., Huang W., Israni S., Jett J., Kadner K., Kimball H., Kobayashi A., Larionov V., Leem S.-H., Lopez F., Lou Y., Lowry S., Malfatti S., Martinez D., McCready P.M., Medina C., Morgan J., Nelson K., Nolan M., Ovcharenko I., Pitluck S., Pollard M., Popkie A.P., Predki P., Quan G., Ramirez L., Rash S., Retterer J., Rodriguez A., Rogers S., Salamov A., Salazar A., She X., Smith D., Slezak T., Solovyev V., Thayer N., Tice H., Tsai M., Ustaszewska A., Vo N., Wagner M., Wheeler J., Wu K., Xie G., Yang J., Dubchak I., Furey T.S., DeJong P., Dickson M., Gordon D., Eichler E.E., Pennacchio L.A., Richardson P., Stubbs L., Rokhsar D.S., Myers R.M., Rubin E.M., Lucas S.M. Nature 428:529-535(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[2]	Ensembl Submitted (JUL-2011) to UniProtKB Cited for: IDENTIFICATION.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AC008763 Genomic DNA. No translation available.
IPI	IPI01015328.
3D structure databases
ProteinModelPortal	F5H315.
SMR	F5H315. Positions 105-135, 144-182, 255-280, 352-465, 569-617.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENST00000534844; ENSP00000438225; ENSG00000076924.
Organism-specific databases
HGNC	HGNC:14089. XAB2.
GenAtlas	Search...
Gene expression databases
ArrayExpress	F5H315.
Bgee	F5H315.
Family and domain databases
Gene3D	1.25.40.10. 4 hits.
InterPro	IPR003107. HAT. IPR013026. TPR-contain_dom. IPR011990. TPR-like_helical. IPR013105. TPR_2. IPR019734. TPR_repeat. [Graphical view]
Pfam	PF07719. TPR_2. 2 hits. [Graphical view]
SMART	SM00386. HAT. 11 hits. [Graphical view]
PROSITE	PS50005. TPR. 4 hits. PS50293. TPR_REGION. 3 hits. [Graphical view]
ProtoNet	Search...
Other
ChiTaRS	XAB2. human.
NextBio	35508531.

Entry information

Entry name

F5H315_HUMAN

Accession

Primary (citable) accession number: F5H315

Entry history

Integrated into UniProtKB/TrEMBL:	June 28, 2011
Last sequence update:	June 28, 2011
Last modified:	May 1, 2013
This is version 15 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

Disclaimer

Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.