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F5H008 (F5H008_HUMAN) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 23. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:VPS33B Ensembl ENSP00000444053
OrganismHomo sapiens (Human) [Reference proteome] Ensembl ENSP00000444053
Taxonomic identifier9606 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Protein attributes

Sequence length590 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSP00000444053

Ontologies

Sequences

Sequence LengthMass (Da)Tools
F5H008 [UniParc].

Last modified June 28, 2011. Version 1.
Checksum: 929FDF9128B3FD5C

FASTA59067,606
        10         20         30         40         50         60 
MAFPHRPDAP ELPDFSMLKR LARDQLIYLL EQQHEVDKLY KVENKPALSS NEQLCFLVRP 

        70         80         90        100        110        120 
RIKNMRYIAS LVNADKLAGR TRKYKVIFSP QKFYACEMVL EEEGIYGDVS CDEWAFSLLP 

       130        140        150        160        170        180 
LDVDLLSMEL PEFFRDYFLE GDQRWINTVA QALHLLSTLY GPFPNCYGIG RCAKMAYELW 

       190        200        210        220        230        240 
RNLEEEEDGE TKGRRPEIGH IFLLDRDVDF VTALCSQVVY EGLVDDTFRI KCGSVDFGPE 

       250        260        270        280        290        300 
VTSSDKSLKV LLNAEDKVFN EIRNEHFSNV FGFLSQKARN LQAQYDRRRG MDIKQMKNFV 

       310        320        330        340        350        360 
SQELKGLKQE HRLLSLHIGA CESIMKKKTK QDFQELIKTE HALLEGFNIR ESTSYIEEHI 

       370        380        390        400        410        420 
DRQVSPIESL RLMCLLSITE NGLIPKDYRS LKTQYLQSYG PEHLLTFSNL RRAGLLTEQA 

       430        440        450        460        470        480 
PGDTLTAVES KVSKLVTDKA AGKITDAFSS LAKRSNFRAI SKKLNLIPRV DGEYDLKVPR 

       490        500        510        520        530        540 
DMAYVFGGAY VPLSCRIIEQ VLERRSWQGL DEVVRLLNCS DFAFTDMTKE DKASSESLRL 

       550        560        570        580        590 
ILVVFLGGCT FSEISALRFL GREKGYRFIF LTTAVTNSAR LMEAMSEVKA 

« Hide

References

« Hide 'large scale' references
[1]"Analysis of the DNA sequence and duplication history of human chromosome 15."
Zody M.C., Garber M., Sharpe T., Young S.K., Rowen L., O'Neill K., Whittaker C.A., Kamal M., Chang J.L., Cuomo C.A., Dewar K., FitzGerald M.G., Kodira C.D., Madan A., Qin S., Yang X., Abbasi N., Abouelleil A. expand/collapse author list , Arachchi H.M., Baradarani L., Birditt B., Bloom S., Bloom T., Borowsky M.L., Burke J., Butler J., Cook A., DeArellano K., DeCaprio D., Dorris L. III, Dors M., Eichler E.E., Engels R., Fahey J., Fleetwood P., Friedman C., Gearin G., Hall J.L., Hensley G., Johnson E., Jones C., Kamat A., Kaur A., Locke D.P., Madan A., Munson G., Jaffe D.B., Lui A., Macdonald P., Mauceli E., Naylor J.W., Nesbitt R., Nicol R., O'Leary S.B., Ratcliffe A., Rounsley S., She X., Sneddon K.M., Stewart S., Sougnez C., Stone S.M., Topham K., Vincent D., Wang S., Zimmer A.R., Birren B.W., Hood L., Lander E.S., Nusbaum C.
Nature 440:671-675(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[2]"Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach."
Gauci S., Helbig A.O., Slijper M., Krijgsveld J., Heck A.J., Mohammed S.
Anal. Chem. 81:4493-4501(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
[3]"Initial characterization of the human central proteome."
Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Burckstummer T., Bennett K.L., Superti-Furga G., Colinge J.
BMC Syst. Biol. 5:17-17(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
[4]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AC068831 Genomic DNA. No translation available.
RefSeqNP_001276077.1. NM_001289148.1.
UniGeneHs.745007.

3D structure databases

ProteinModelPortalF5H008.
SMRF5H008. Positions 28-587.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENST00000535906; ENSP00000444053; ENSG00000184056.
GeneID26276.
UCSCuc010uqu.1. human.

Organism-specific databases

HGNCHGNC:12712. VPS33B.
GenAtlasSearch...

Gene expression databases

ArrayExpressF5H008.
BgeeF5H008.

Family and domain databases

Gene3D3.40.50.1910. 2 hits.
InterProIPR027482. Sec-1-like_dom2.
IPR001619. Sec1-like.
IPR027121. VPS33.
[Graphical view]
PANTHERPTHR11679. PTHR11679. 1 hit.
PTHR11679:SF1. PTHR11679:SF1. 1 hit.
PfamPF00995. Sec1. 1 hit.
[Graphical view]
SUPFAMSSF56815. SSF56815. 2 hits.
ProtoNetSearch...

Other

GenomeRNAi26276.
NextBio35507930.

Entry information

Entry nameF5H008_HUMAN
AccessionPrimary (citable) accession number: F5H008
Entry history
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: June 11, 2014
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.