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Protein
Submitted name:

Vacuolar protein sorting-associated protein 33B

Gene

VPS33B

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Vacuolar protein sorting-associated protein 33BImported
Gene namesi
Name:VPS33BImported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640 Componenti: Chromosome 15

Organism-specific databases

HGNCiHGNC:12712. VPS33B.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Proteomic databases

MaxQBiF5H008.

Expressioni

Gene expression databases

BgeeiF5H008.
ExpressionAtlasiF5H008. baseline and differential.

Interactioni

Protein-protein interaction databases

STRINGi9606.ENSP00000327650.

Structurei

3D structure databases

ProteinModelPortaliF5H008.
SMRiF5H008. Positions 28-587.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00530000063488.

Family and domain databases

Gene3Di3.40.50.1910. 2 hits.
InterProiIPR027482. Sec-1-like_dom2.
IPR001619. Sec1-like.
IPR027121. VPS33.
[Graphical view]
PANTHERiPTHR11679. PTHR11679. 1 hit.
PTHR11679:SF1. PTHR11679:SF1. 1 hit.
PfamiPF00995. Sec1. 1 hit.
[Graphical view]
SUPFAMiSSF56815. SSF56815. 2 hits.

Sequencei

Sequence statusi: Complete.

F5H008-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAFPHRPDAP ELPDFSMLKR LARDQLIYLL EQQHEVDKLY KVENKPALSS
60 70 80 90 100
NEQLCFLVRP RIKNMRYIAS LVNADKLAGR TRKYKVIFSP QKFYACEMVL
110 120 130 140 150
EEEGIYGDVS CDEWAFSLLP LDVDLLSMEL PEFFRDYFLE GDQRWINTVA
160 170 180 190 200
QALHLLSTLY GPFPNCYGIG RCAKMAYELW RNLEEEEDGE TKGRRPEIGH
210 220 230 240 250
IFLLDRDVDF VTALCSQVVY EGLVDDTFRI KCGSVDFGPE VTSSDKSLKV
260 270 280 290 300
LLNAEDKVFN EIRNEHFSNV FGFLSQKARN LQAQYDRRRG MDIKQMKNFV
310 320 330 340 350
SQELKGLKQE HRLLSLHIGA CESIMKKKTK QDFQELIKTE HALLEGFNIR
360 370 380 390 400
ESTSYIEEHI DRQVSPIESL RLMCLLSITE NGLIPKDYRS LKTQYLQSYG
410 420 430 440 450
PEHLLTFSNL RRAGLLTEQA PGDTLTAVES KVSKLVTDKA AGKITDAFSS
460 470 480 490 500
LAKRSNFRAI SKKLNLIPRV DGEYDLKVPR DMAYVFGGAY VPLSCRIIEQ
510 520 530 540 550
VLERRSWQGL DEVVRLLNCS DFAFTDMTKE DKASSESLRL ILVVFLGGCT
560 570 580 590
FSEISALRFL GREKGYRFIF LTTAVTNSAR LMEAMSEVKA
Length:590
Mass (Da):67,606
Last modified:June 28, 2011 - v1
Checksum:i929FDF9128B3FD5C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC068831 Genomic DNA. No translation available.
RefSeqiNP_001276077.1. NM_001289148.1.
UniGeneiHs.745007.

Genome annotation databases

EnsembliENST00000535906; ENSP00000444053; ENSG00000184056.
GeneIDi26276.
KEGGihsa:26276.
UCSCiuc010uqu.1. human.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC068831 Genomic DNA. No translation available.
RefSeqiNP_001276077.1. NM_001289148.1.
UniGeneiHs.745007.

3D structure databases

ProteinModelPortaliF5H008.
SMRiF5H008. Positions 28-587.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9606.ENSP00000327650.

Proteomic databases

MaxQBiF5H008.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000535906; ENSP00000444053; ENSG00000184056.
GeneIDi26276.
KEGGihsa:26276.
UCSCiuc010uqu.1. human.

Organism-specific databases

CTDi26276.
HGNCiHGNC:12712. VPS33B.
GenAtlasiSearch...

Phylogenomic databases

GeneTreeiENSGT00530000063488.

Miscellaneous databases

ChiTaRSiVPS33B. human.
GenomeRNAii26276.
NextBioi35507930.

Gene expression databases

BgeeiF5H008.
ExpressionAtlasiF5H008. baseline and differential.

Family and domain databases

Gene3Di3.40.50.1910. 2 hits.
InterProiIPR027482. Sec-1-like_dom2.
IPR001619. Sec1-like.
IPR027121. VPS33.
[Graphical view]
PANTHERiPTHR11679. PTHR11679. 1 hit.
PTHR11679:SF1. PTHR11679:SF1. 1 hit.
PfamiPF00995. Sec1. 1 hit.
[Graphical view]
SUPFAMiSSF56815. SSF56815. 2 hits.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Analysis of the DNA sequence and duplication history of human chromosome 15."
    Zody M.C., Garber M., Sharpe T., Young S.K., Rowen L., O'Neill K., Whittaker C.A., Kamal M., Chang J.L., Cuomo C.A., Dewar K., FitzGerald M.G., Kodira C.D., Madan A., Qin S., Yang X., Abbasi N., Abouelleil A.
    , Arachchi H.M., Baradarani L., Birditt B., Bloom S., Bloom T., Borowsky M.L., Burke J., Butler J., Cook A., DeArellano K., DeCaprio D., Dorris L. III, Dors M., Eichler E.E., Engels R., Fahey J., Fleetwood P., Friedman C., Gearin G., Hall J.L., Hensley G., Johnson E., Jones C., Kamat A., Kaur A., Locke D.P., Madan A., Munson G., Jaffe D.B., Lui A., Macdonald P., Mauceli E., Naylor J.W., Nesbitt R., Nicol R., O'Leary S.B., Ratcliffe A., Rounsley S., She X., Sneddon K.M., Stewart S., Sougnez C., Stone S.M., Topham K., Vincent D., Wang S., Zimmer A.R., Birren B.W., Hood L., Lander E.S., Nusbaum C.
    Nature 440:671-675(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  2. "Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach."
    Gauci S., Helbig A.O., Slijper M., Krijgsveld J., Heck A.J., Mohammed S.
    Anal. Chem. 81:4493-4501(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  3. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  4. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.

Entry informationi

Entry nameiF5H008_HUMAN
AccessioniPrimary (citable) accession number: F5H008
Entry historyi
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: June 24, 2015
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.