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F5BXG7 (F5BXG7_RHDV) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 16. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length2344 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Catalytic activity

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). SAAS SAAS014759

Sequence similarities

Contains RdRp catalytic domain. SAAS SAAS014759

Contains SF3 helicase domain. SAAS SAAS014759

Contains SFhelicase domain. SAAS SAAS014759

Sequences

Sequence LengthMass (Da)Tools
F5BXG7 [UniParc].

Last modified June 28, 2011. Version 1.
Checksum: AAA47274D6CC39F3

FASTA2,344256,610
        10         20         30         40         50         60 
MAVMSRPIGT TTAILPEKKP LSFFLDLRDK TPPCCIRATG KLAWPVFLGQ NENEGPLETC 

        70         80         90        100        110        120 
DICGKWLNGF GNFGLEDLGN VCLCSIAQQK HKFGPVCLCN RAYIHDCGRW RRRSRFLKHY 

       130        140        150        160        170        180 
KALNKVIPCA YRFDEGSSPP VFEGEVDDLF VELGAPTSMG FMDKKLLKKG KKLMDKFVDV 

       190        200        210        220        230        240 
DEPCLTSRDA GLLDSIASDN TIRAKLEEEY GVEMVQAARD RKDFMKNLRL ALDNRPANPV 

       250        260        270        280        290        300 
TWHTKLGNIT DKGKQWAKKV VYGACKVTEP LKTLASILLV GLHNVIAVDT TVMLSTFKPV 

       310        320        330        340        350        360 
NLLAILMDWT NDLAGFVTTL VRLLELYGVV QATVNLIIEG VKSFWDKVIC ATDRCYDLLK 

       370        380        390        400        410        420 
RLFDTFEDSV PTGPTAGCLI FMAFVFSTVV GYLPNNNVIT TFMKGAGKLT TFAGVIGAIR 

       430        440        450        460        470        480 
TLWITINQHM VAKDLTSIQQ KVMTVVKMAN EAATLGQLEI VSCLCSDLEN TLTNRCTLPS 

       490        500        510        520        530        540 
YNQHLGILNA SQKVVSDLHT MVLGKINMTK QRPQPVAVIF KGAPGIGKTY LVHRIARDLG 

       550        560        570        580        590        600 
CQHPSTINFG LDHFDSYTGE EVAIADEFNT CGDGESWVEL FIQMVNTNPC PLNCDKAENK 

       610        620        630        640        650        660 
NKVFNSKYLL CTTNSNMILN ATHPRAGAFY RRVLIVEARN KAVESWQATR HGAKPGKSCY 

       670        680        690        700        710        720 
NKDMSHLTFQ VYPHSMPAPG FVFVGDKLVK SQVAPREYKY SELLDLIKSE HPDVASFEGA 

       730        740        750        760        770        780 
NKFNFIYPDA QYEQALLMWK QYFVMYGCVA RLAKSFVDDI PYNQVHISKA SDPKIDGCVE 

       790        800        810        820        830        840 
YQCKFQHLWR MVPQFVLGCV NMTNQLGTPL TQQQLDRITN GVEGVTVTTV NNILPFHSQT 

       850        860        870        880        890        900 
TLINPSFIKL IWAVRKHLKG LSGVTKVAQF IWRVMTNPVD AYGSLVRTLI GAATFSDDPV 

       910        920        930        940        950        960 
STTIICSNCT IQIHSCGGLL VRYSRDPVPV ASDNVDRGDQ GVDVFTDPNL ISGFSWRQIA 

       970        980        990       1000       1010       1020 
HLFVEVISHL CANHLVNLAT MAALGAVATK AFQGVKGKTK RGRGARVNLG NDEYDEWQAA 

      1030       1040       1050       1060       1070       1080 
RREFVNAHDM TAEEYLAMKN KAAMGSDDQD SVMFRSWWTR RQLRPDEDQV TIVGRGGVRN 

      1090       1100       1110       1120       1130       1140 
EVIRTRARQA PKGPKILDDG GFYDNDYEGL PGFMRHNGSG WMIHIGNGLY ISNTHTARSS 

      1150       1160       1170       1180       1190       1200 
CSEIVTCSPT TDLCLVKGET IRSVAQIAEG TPVCDWKKSP ISTYGIKKTL SDSTKIDVLA 

      1210       1220       1230       1240       1250       1260 
YDGCTQTTHG DCGLPLYDSS GKIVAIHTGK LLGFSKMCTL VDLTITKGVY ETSNFFCGEP 

      1270       1280       1290       1300       1310       1320 
IDYRGITAHR LVGAEPRPPV SGTRYARVPG VPDEYKTGYR PANLGRGDPD SDKSLMNIAV 

      1330       1340       1350       1360       1370       1380 
KNLQVYQQEP KLDKVDEFIE RAAADVLGYL RFLTKGERQA NLNFKAAFNT LDLSTSCGPF 

      1390       1400       1410       1420       1430       1440 
VPGKKIDHIK DGVMDQVLAK HLYKCWSVAN SGKALHHIYA CGLKDELRPL DKVKEGKKRL 

      1450       1460       1470       1480       1490       1500 
LWGCDVGVAV CAAAVFHNIC YKLKMVARFG PIAVGVDMTS RDVDVIINNL TAKASDFLCL 

      1510       1520       1530       1540       1550       1560 
DYSKWDSTMS PCVVRLAIDI LADCCEQTEL TKSVVLTLKS HPMTILDAMI VQTKRGLPSG 

      1570       1580       1590       1600       1610       1620 
MPFTSVINSI CHWLLWSAAV YKSCAEIGLH CSNLYEDAPF YTYGDDGVYA MTPMMVSLLP 

      1630       1640       1650       1660       1670       1680 
AIIENLRDYG LSPTAADKTE FIDVCPLSKI SFLKRTFELT DIGWVSKLDK SSILRQLEWS 

      1690       1700       1710       1720       1730       1740 
KTTSRHMLIE ETYDLAKEER GVQLEELQVA AAAHGQEFFS FVRKELERQQ AYTQFSVYSY 

      1750       1760       1770       1780       1790       1800 
DAARKILADR KRVVSVVPDD EFVNVMEGKA RTAPQGEAAG TATTASVPGT TTDGMDPGVV 

      1810       1820       1830       1840       1850       1860 
AATSVVTAEN SSASVATAGI GGPPQQVDQQ ETWRTNFYYN DVFTWSVADA PGSILYTVQH 

      1870       1880       1890       1900       1910       1920 
SPQNNPFTAV LSQMYAGWAG GMQFRFIVAG SGVFGGRLVA AVIPPGIEIG PGLEVRQFPH 

      1930       1940       1950       1960       1970       1980 
VVIDARSLEP VTITMPDLRP NMYHPTGDPG LVPTLVLSVY NNLINPFGGS TNAIQVTVET 

      1990       2000       2010       2020       2030       2040 
RPSDDFEFVM IRAPSSKTVD SISPAGLITT PVLTGVGNDN RWDGQIVGLQ PVPGGFSTCN 

      2050       2060       2070       2080       2090       2100 
RHWNLNGSTY GWSSPRFADI DHRRGSASYS GNNSANALQF WYANAGSAID NPISQVAPDG 

      2110       2120       2130       2140       2150       2160 
FPDMSFVPFN SPNIPTAGWV GFGGIWNSNN GAPAATTVQA YELGFATGAP NNLQPTTNTS 

      2170       2180       2190       2200       2210       2220 
GAQTVAKSIY AVVTGTNQNP TGLFVMASGV ISTPNASAVT YTPQPDRIVT TPGTPAAAPV 

      2230       2240       2250       2260       2270       2280 
GKNTPIMFAS VVRRTGDVNA AAGSTNGTQY GTGSQPLPVT IGLSLNNYSS ALMPGQFFVW 

      2290       2300       2310       2320       2330       2340 
QLTFASGFME IGLSVDGYFY AGTGASTTLI DLTELIDVRP VGPRPSKSTL VFNLGGTTNG 


FSYV 

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References

[1]Liu J.S., Liu H.R., Guo D.C., Qu L.D.
Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: HYD EMBL AEB26305.1.
[2]"Atomic model of rabbit hemorrhagic disease virus by cryo-electron microscopy and crystallography."
Wang X., Xu F., Liu J., Gao B., Liu Y., Zhai Y., Ma J., Zhang K., Baker T.S., Schulten K., Zheng D., Pang H., Sun F.
PLoS Pathog. 9:e1003132-e1003132(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: STRUCTURE BY ELECTRON MICROSCOPY (6.50 ANGSTROMS) OF 1766-2344.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
JF412629 Genomic RNA. Translation: AEB26305.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
3J1Pelectron microscopy6.50A/B/C1766-2344[»]
ProteinModelPortalF5BXG7.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Family and domain databases

Gene3D3.40.50.300. 2 hits.
InterProIPR003593. AAA+_ATPase.
IPR004005. Calicivirus_coat.
IPR004004. Helic/Pol/Pept_Calicivir-typ.
IPR000605. Helicase_SF3_ssDNA/RNA_vir.
IPR014759. Helicase_SF3_ssRNA_vir.
IPR027417. P-loop_NTPase.
IPR000317. Peptidase_C24.
IPR001205. RNA-dir_pol_C.
IPR007094. RNA-dir_pol_PSvirus.
IPR009003. Trypsin-like_Pept_dom.
[Graphical view]
PfamPF00915. Calici_coat. 1 hit.
PF03510. Peptidase_C24. 1 hit.
PF00680. RdRP_1. 1 hit.
PF00910. RNA_helicase. 1 hit.
[Graphical view]
PRINTSPR00916. 2CENDOPTASE.
PR00918. CALICVIRUSNS.
SMARTSM00382. AAA. 1 hit.
[Graphical view]
SUPFAMSSF50494. SSF50494. 1 hit.
SSF52540. SSF52540. 1 hit.
PROSITEPS50507. RDRP_SSRNA_POS. 1 hit.
PS51218. SF3_HELICASE_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF5BXG7_RHDV
AccessionPrimary (citable) accession number: F5BXG7
Entry history
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: April 16, 2014
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)