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Protein

50S ribosomal protein L20

Gene

rplT

Organism
Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal proteinUniRule annotation

Keywords - Ligandi

RNA-binding, rRNA-bindingUniRule annotation

Enzyme and pathway databases

BioCyciTSP499229:GHS2-695-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L20UniRule annotation
Gene namesi
Name:rplTUniRule annotationImported
Ordered Locus Names:TEPIRE1_0732Imported
OrganismiTepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1)Imported
Taxonomic identifieri1209989 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaThermoanaerobacteralesThermoanaerobacteraceaeTepidanaerobacter
ProteomesiUP000010802 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L20P family.UniRule annotation

Phylogenomic databases

KOiK02887.
OMAiRKNRCYS.

Family and domain databases

HAMAPiMF_00382. Ribosomal_L20.
InterProiIPR005813. Ribosomal_L20.
[Graphical view]
PANTHERiPTHR10986. PTHR10986. 1 hit.
PfamiPF00453. Ribosomal_L20. 1 hit.
[Graphical view]
PRINTSiPR00062. RIBOSOMALL20.
TIGRFAMsiTIGR01032. rplT_bact. 1 hit.
PROSITEiPS00937. RIBOSOMAL_L20. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F4LW83-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MARVKKGVTA RKKHKKVIKL AKGYRGSKSK LFRPANQAVL KAQSHAYRGR
60 70 80 90 100
KLKKRDFRKL WIARINAAAR SNGISYSKFI NGLKKAGVQI NRKMLSEMAI
110
NDANGFTQLV DIAKANSK
Length:118
Mass (Da):13,255
Last modified:June 28, 2011 - v1
Checksum:iC28AAA1BA67A470B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
HF563609 Genomic DNA. Translation: CDI40469.1.
RefSeqiWP_013777782.1. NC_019954.2.
YP_004460166.1. NC_015519.1.

Genome annotation databases

EnsemblBacteriaiAEE90859; AEE90859; TepRe1_0672.
CDI40469; CDI40469; TepiRe1_0732.
KEGGitae:TepiRe1_0732.
tep:TepRe1_0672.
PATRICi54624276. VBITepSp18581_0695.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
HF563609 Genomic DNA. Translation: CDI40469.1.
RefSeqiWP_013777782.1. NC_019954.2.
YP_004460166.1. NC_015519.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEE90859; AEE90859; TepRe1_0672.
CDI40469; CDI40469; TepiRe1_0732.
KEGGitae:TepiRe1_0732.
tep:TepRe1_0672.
PATRICi54624276. VBITepSp18581_0695.

Phylogenomic databases

KOiK02887.
OMAiRKNRCYS.

Enzyme and pathway databases

BioCyciTSP499229:GHS2-695-MONOMER.

Family and domain databases

HAMAPiMF_00382. Ribosomal_L20.
InterProiIPR005813. Ribosomal_L20.
[Graphical view]
PANTHERiPTHR10986. PTHR10986. 1 hit.
PfamiPF00453. Ribosomal_L20. 1 hit.
[Graphical view]
PRINTSiPR00062. RIBOSOMALL20.
TIGRFAMsiTIGR01032. rplT_bact. 1 hit.
PROSITEiPS00937. RIBOSOMAL_L20. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "First genome sequence of a syntrophic acetate-oxidizing bacterium, Tepidanaerobacter acetatoxydans strain Re1."
    Manzoor S., Bongcam-Rudloff E., Schnurer A., Muller B.
    Genome Announc. 1:E00213-E00213(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiF4LW83_TEPAE
AccessioniPrimary (citable) accession number: F4LW83
Entry historyi
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: May 27, 2015
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.