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F4LW83 (F4LW83_TEPAE) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 15. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
50S ribosomal protein L20 RuleBase RU000560 HAMAP-Rule MF_00382
Gene names
Name:rplT EMBL CDI40469.1
Ordered Locus Names:TepiRe1_0732 EMBL CDI40469.1, TepRe1_0672 EMBL AEE90859.1
OrganismTepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1) [Complete proteome] [HAMAP]
Taxonomic identifier1209989 [NCBI]
Taxonomic lineageBacteriaFirmicutesClostridiaThermoanaerobacteralesThermoanaerobacteraceaeTepidanaerobacter

Protein attributes

Sequence length118 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit By similarity. RuleBase RU000560

Sequence similarities

Belongs to the ribosomal protein L20P family. RuleBase RU000560

Ontologies

Keywords
   LigandRNA-binding
rRNA-binding RuleBase RU000560
   Molecular functionRibonucleoprotein
Ribosomal protein RuleBase RU000560 EMBL AEE90859.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: InterPro

   Cellular_componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionrRNA binding

Inferred from electronic annotation. Source: UniProtKB-KW

structural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
F4LW83 [UniParc].

Last modified June 28, 2011. Version 1.
Checksum: C28AAA1BA67A470B

FASTA11813,255
        10         20         30         40         50         60 
MARVKKGVTA RKKHKKVIKL AKGYRGSKSK LFRPANQAVL KAQSHAYRGR KLKKRDFRKL 

        70         80         90        100        110 
WIARINAAAR SNGISYSKFI NGLKKAGVQI NRKMLSEMAI NDANGFTQLV DIAKANSK 

« Hide

References

« Hide 'large scale' references
[1]"Complete sequence of Tepidanaerobacter sp. Re1."
US DOE Joint Genome Institute
Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Mikhailova N., Pagani I., Teshima H., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Lcollab F.I., Woyke T.
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 21804 / JCM 16047 / Re1 and Re1 EMBL AEE90859.1.
[2]"First Genome Sequence of a Syntrophic Acetate-Oxidizing Bacterium, Tepidanaerobacter acetatoxydans Strain Re1."
Manzoor S., Bongcam-Rudloff E., Schnurer A., Muller B.
Genome Announc. 1:e00213-e00212(2013)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Re1 EMBL CDI40469.1.
[3]"First genome sequence of a syntrophic acetate-oxidizing bacterium, Tepidanaerobacter acetatoxydans strain Re1."
Manzoor S., Bongcam-Rudloff E., Schnurer A., Muller B.
Genome Announc. 1:E00213-E00213(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002728 Genomic DNA. Translation: AEE90859.1.
HF563609 Genomic DNA. Translation: CDI40469.1.
RefSeqYP_004460166.1. NC_015519.1.
YP_008618714.1. NC_019954.2.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEE90859; AEE90859; TepRe1_0672.
GeneID10597433.
17374301.
KEGGtep:TepRe1_0672.
PATRIC54624276. VBITepSp18581_0695.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK02887.

Enzyme and pathway databases

BioCycTSP499229:GHS2-695-MONOMER.

Family and domain databases

HAMAPMF_00382. Ribosomal_L20.
InterProIPR005813. Ribosomal_L20.
[Graphical view]
PANTHERPTHR10986. PTHR10986. 1 hit.
PfamPF00453. Ribosomal_L20. 1 hit.
[Graphical view]
PRINTSPR00062. RIBOSOMALL20.
TIGRFAMsTIGR01032. rplT_bact. 1 hit.
PROSITEPS00937. RIBOSOMAL_L20. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF4LW83_TEPAE
AccessionPrimary (citable) accession number: F4LW83
Entry history
Integrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: February 19, 2014
This is version 15 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)