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Protein

Putative chaperone protein ClpB2, chloroplastic

Gene

CLPB2

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi172 – 1798ATPSequence analysis
Nucleotide bindingi571 – 5788ATPSequence analysis

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Putative chaperone protein ClpB2, chloroplastic
Alternative name(s):
ATP-dependent Clp protease ATP-binding subunit ClpB homolog 2
Casein lytic proteinase B2
Gene namesi
Name:CLPB2
Synonyms:CLPB4
Ordered Locus Names:At4g14670
ORF Names:dl3375w, FCAALL.285
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

TAIRiAT4G14670.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 623623Putative chaperone protein ClpB2, chloroplasticPRO_0000412572Add
BLAST

Proteomic databases

PaxDbiF4JVJ1.
PRIDEiF4JVJ1.

Expressioni

Gene expression databases

GenevisibleiF4JVJ1. AT.

Interactioni

Protein-protein interaction databases

BioGridi12414. 1 interaction.
STRINGi3702.AT4G14670.1.

Structurei

3D structure databases

ProteinModelPortaliF4JVJ1.
SMRiF4JVJ1. Positions 5-622.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni129 – 375247IBy similarityAdd
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili368 – 46295Sequence analysisAdd
BLAST

Sequence similaritiesi

Belongs to the ClpA/ClpB family.Curated

Keywords - Domaini

Coiled coil

Phylogenomic databases

eggNOGiKOG1051. Eukaryota.
COG0542. LUCA.
HOGENOMiHOG000218211.
InParanoidiF4JVJ1.
OMAiMSEYNDK.

Family and domain databases

Gene3Di1.10.1780.10. 2 hits.
3.40.50.300. 2 hits.
InterProiIPR003593. AAA+_ATPase.
IPR003959. ATPase_AAA_core.
IPR004176. Clp_N.
IPR001270. ClpA/B.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF00004. AAA. 1 hit.
PF07724. AAA_2. 1 hit.
PF02861. Clp_N. 1 hit.
[Graphical view]
PRINTSiPR00300. CLPPROTEASEA.
SMARTiSM00382. AAA. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 2 hits.
SSF81923. SSF81923. 1 hit.

Sequencei

Sequence statusi: Complete.

F4JVJ1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNDLKFDPNV KLILASARSH AMSLSHGQVT PLHLGVTLIS DLTSVFYRAI
60 70 80 90 100
TSAGDGDISA QSVVNVINQS LYKLTKRNLG DTKVGVAVLV ISLLEDSQIS
110 120 130 140 150
DVLKEAGVVP EKVKSEVEKL RGEVILRALK TYGTDLVEQA GKLDPVIGRH
160 170 180 190 200
REIRRVIEVL SRRTKNNPVL IGEPGVGKTA VVEGLAQRIL KGDVPINLTG
210 220 230 240 250
VKLISLEFGA MVAGTTLRGQ FEERLKSVLK AVEEAQGKVV LFIDEIHMAL
260 270 280 290 300
GACKASGSTD AAKLLKPMLA RGQLRFIGAT TLEEYRTHVE KDAAFERRFQ
310 320 330 340 350
QVFVAEPSVP DTISILRGLK EKYEGHHGVR IQDRALVLSA QLSERYITGR
360 370 380 390 400
RLPDKAIDLV DESCAHVKAQ LDIQPEEIDS LERKVMQLEI EIHALEKEKD
410 420 430 440 450
DKASEARLSE VRKELDDLRD KLEPLTIKYK KEKKIINETR RLKQNRDDLM
460 470 480 490 500
IALQEAERQH DVPKAAVLKY GAIQEVESAI AKLEKSAKDN VMLTETVGPE
510 520 530 540 550
NIAEVVSRWT GIPVTRLDQN EKKRLISLAD KLHERVVGQD EAVKAVAAAI
560 570 580 590 600
LRSRVGLGRP QQPSGSFLFL GPTGVGKTEL AKALAEQLFD SENLLVRLDM
610 620
SEYNDKFSVN KLIGAPPGYV HWS
Length:623
Mass (Da):68,898
Last modified:June 28, 2011 - v1
Checksum:i95EA1CF869752769
GO

Sequence cautioni

The sequence CAB46061.1 differs from that shown. Reason: Erroneous gene model prediction. Curated
The sequence CAB78509.1 differs from that shown. Reason: Erroneous gene model prediction. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z97336 Genomic DNA. Translation: CAB46061.1. Sequence problems.
AL161539 Genomic DNA. Translation: CAB78509.1. Sequence problems.
CP002687 Genomic DNA. Translation: AEE83473.1.
PIRiG85160.
RefSeqiNP_567437.1. NM_117549.1.
UniGeneiAt.54318.

Genome annotation databases

EnsemblPlantsiAT4G14670.1; AT4G14670.1; AT4G14670.
GeneIDi827117.
GrameneiAT4G14670.1; AT4G14670.1; AT4G14670.
KEGGiath:AT4G14670.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z97336 Genomic DNA. Translation: CAB46061.1. Sequence problems.
AL161539 Genomic DNA. Translation: CAB78509.1. Sequence problems.
CP002687 Genomic DNA. Translation: AEE83473.1.
PIRiG85160.
RefSeqiNP_567437.1. NM_117549.1.
UniGeneiAt.54318.

3D structure databases

ProteinModelPortaliF4JVJ1.
SMRiF4JVJ1. Positions 5-622.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi12414. 1 interaction.
STRINGi3702.AT4G14670.1.

Proteomic databases

PaxDbiF4JVJ1.
PRIDEiF4JVJ1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT4G14670.1; AT4G14670.1; AT4G14670.
GeneIDi827117.
GrameneiAT4G14670.1; AT4G14670.1; AT4G14670.
KEGGiath:AT4G14670.

Organism-specific databases

TAIRiAT4G14670.

Phylogenomic databases

eggNOGiKOG1051. Eukaryota.
COG0542. LUCA.
HOGENOMiHOG000218211.
InParanoidiF4JVJ1.
OMAiMSEYNDK.

Miscellaneous databases

PROiF4JVJ1.

Gene expression databases

GenevisibleiF4JVJ1. AT.

Family and domain databases

Gene3Di1.10.1780.10. 2 hits.
3.40.50.300. 2 hits.
InterProiIPR003593. AAA+_ATPase.
IPR003959. ATPase_AAA_core.
IPR004176. Clp_N.
IPR001270. ClpA/B.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF00004. AAA. 1 hit.
PF07724. AAA_2. 1 hit.
PF02861. Clp_N. 1 hit.
[Graphical view]
PRINTSiPR00300. CLPPROTEASEA.
SMARTiSM00382. AAA. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 2 hits.
SSF81923. SSF81923. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Analysis of 1.9 Mb of contiguous sequence from chromosome 4 of Arabidopsis thaliana."
    Bevan M., Bancroft I., Bent E., Love K., Goodman H.M., Dean C., Bergkamp R., Dirkse W., van Staveren M., Stiekema W., Drost L., Ridley P., Hudson S.-A., Patel K., Murphy G., Piffanelli P., Wedler H., Wedler E.
    , Wambutt R., Weitzenegger T., Pohl T., Terryn N., Gielen J., Villarroel R., De Clercq R., van Montagu M., Lecharny A., Aubourg S., Gy I., Kreis M., Lao N., Kavanagh T., Hempel S., Kotter P., Entian K.-D., Rieger M., Schaefer M., Funk B., Mueller-Auer S., Silvey M., James R., Monfort A., Pons A., Puigdomenech P., Douka A., Voukelatou E., Milioni D., Hatzopoulos P., Piravandi E., Obermaier B., Hilbert H., Duesterhoeft A., Moores T., Jones J.D.G., Eneva T., Palme K., Benes V., Rechmann S., Ansorge W., Cooke R., Berger C., Delseny M., Voet M., Volckaert G., Mewes H.-W., Klosterman S., Schueller C., Chalwatzis N.
    Nature 391:485-488(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana."
    Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M., de Simone V., Obermaier B.
    , Mache R., Mueller M., Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B., Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M., Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E., Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K., Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W., Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A., Martienssen R., McCombie W.R.
    Nature 402:769-777(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  3. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.

Entry informationi

Entry nameiCLPB2_ARATH
AccessioniPrimary (citable) accession number: F4JVJ1
Secondary accession number(s): O23323
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 21, 2011
Last sequence update: June 28, 2011
Last modified: February 17, 2016
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Caution

Lacks the C-terminal domain, which is a conserved feature of the family.Curated

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.