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Protein

Probable cysteine protease RDL6

Gene

RDL6

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Probable thiol protease.By similarity

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Active sitei157PROSITE-ProRule annotation1
Active sitei294PROSITE-ProRule annotation1
Active sitei314PROSITE-ProRule annotation1

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Hydrolase, Protease, Thiol protease

Protein family/group databases

MEROPSiC01.A22.

Names & Taxonomyi

Protein namesi
Recommended name:
Probable cysteine protease RDL6Curated (EC:3.4.22.-Curated)
Alternative name(s):
RD21A-like protease 6Curated
Gene namesi
Name:RDL6Curated
Ordered Locus Names:At4g23520Imported
ORF Names:F16G20.220Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

TAIRiAT4G23520.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 26Sequence analysisAdd BLAST26
PropeptideiPRO_000043632427 – 132Activation peptideCuratedAdd BLAST106
ChainiPRO_5005397739133 – 356Probable cysteine protease RDL6Add BLAST224

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Glycosylationi37N-linked (GlcNAc...)PROSITE-ProRule annotation1
Glycosylationi86N-linked (GlcNAc...)PROSITE-ProRule annotation1
Disulfide bondi154 ↔ 195By similarity
Disulfide bondi188 ↔ 229By similarity
Disulfide bondi288 ↔ 339By similarity

Keywords - PTMi

Disulfide bond, Glycoprotein, Zymogen

Proteomic databases

PaxDbiF4JNL3.

Structurei

3D structure databases

ProteinModelPortaliF4JNL3.
SMRiF4JNL3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the peptidase C1 family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiKOG1543. Eukaryota.
COG4870. LUCA.
InParanoidiF4JNL3.
OMAiDQHNAKN.
OrthoDBiEOG09360EJG.

Family and domain databases

InterProiIPR025661. Pept_asp_AS.
IPR025660. Pept_his_AS.
IPR013128. Peptidase_C1A.
IPR000668. Peptidase_C1A_C.
IPR013201. Prot_inhib_I29.
[Graphical view]
PANTHERiPTHR12411. PTHR12411. 1 hit.
PfamiPF08246. Inhibitor_I29. 1 hit.
PF00112. Peptidase_C1. 1 hit.
[Graphical view]
PRINTSiPR00705. PAPAIN.
SMARTiSM00848. Inhibitor_I29. 1 hit.
SM00645. Pept_C1. 1 hit.
[Graphical view]
PROSITEiPS00640. THIOL_PROTEASE_ASN. 1 hit.
PS00639. THIOL_PROTEASE_HIS. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

F4JNL3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGFVRPVCMT ILFLLIVFVL SAPSSAMDLP ATSGGHNRSN EEVEFIFQMW
60 70 80 90 100
MSKHGKTYTN ALGEKERRFQ NFKDNLRFID QHNAKNLSYQ LGLTRFADLT
110 120 130 140 150
VQEYRDLFPG SPKPKQRNLK TSRRYVPLAG DQLPESVDWR QEGAVSEIKD
160 170 180 190 200
QGTCNSCWAF STVAAVEGLN KIVTGELISL SEQELVDCNL VNNGCYGSGL
210 220 230 240 250
MDTAFQFLIN NNGLDSEKDY PYQGTQGSCN RKQSTSNKVI TIDSYEDVPA
260 270 280 290 300
NDEISLQKAV AHQPVSVGVD KKSQEFMLYR SCIYNGPCGT NLDHALVIVG
310 320 330 340 350
YGSENGQDYW IVRNSWGTTW GDAGYIKIAR NFEDPKGLCG IAMLASYPIK

NSASNA
Length:356
Mass (Da):39,605
Last modified:June 28, 2011 - v1
Checksum:i8F2281BCB42460CC
GO

Sequence cautioni

The sequence CAA20473 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence CAB79307 differs from that shown. Reason: Erroneous gene model prediction.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL031326 Genomic DNA. Translation: CAA20473.1. Sequence problems.
AL161559 Genomic DNA. Translation: CAB79307.1. Sequence problems.
CP002687 Genomic DNA. Translation: AEE84771.1.
PIRiT05390.
RefSeqiNP_567686.2. NM_118483.3.
UniGeneiAt.32421.

Genome annotation databases

EnsemblPlantsiAT4G23520.1; AT4G23520.1; AT4G23520.
GeneIDi828452.
GrameneiAT4G23520.1; AT4G23520.1; AT4G23520.
KEGGiath:AT4G23520.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL031326 Genomic DNA. Translation: CAA20473.1. Sequence problems.
AL161559 Genomic DNA. Translation: CAB79307.1. Sequence problems.
CP002687 Genomic DNA. Translation: AEE84771.1.
PIRiT05390.
RefSeqiNP_567686.2. NM_118483.3.
UniGeneiAt.32421.

3D structure databases

ProteinModelPortaliF4JNL3.
SMRiF4JNL3.
ModBaseiSearch...
MobiDBiSearch...

Protein family/group databases

MEROPSiC01.A22.

Proteomic databases

PaxDbiF4JNL3.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT4G23520.1; AT4G23520.1; AT4G23520.
GeneIDi828452.
GrameneiAT4G23520.1; AT4G23520.1; AT4G23520.
KEGGiath:AT4G23520.

Organism-specific databases

TAIRiAT4G23520.

Phylogenomic databases

eggNOGiKOG1543. Eukaryota.
COG4870. LUCA.
InParanoidiF4JNL3.
OMAiDQHNAKN.
OrthoDBiEOG09360EJG.

Miscellaneous databases

PROiF4JNL3.

Family and domain databases

InterProiIPR025661. Pept_asp_AS.
IPR025660. Pept_his_AS.
IPR013128. Peptidase_C1A.
IPR000668. Peptidase_C1A_C.
IPR013201. Prot_inhib_I29.
[Graphical view]
PANTHERiPTHR12411. PTHR12411. 1 hit.
PfamiPF08246. Inhibitor_I29. 1 hit.
PF00112. Peptidase_C1. 1 hit.
[Graphical view]
PRINTSiPR00705. PAPAIN.
SMARTiSM00848. Inhibitor_I29. 1 hit.
SM00645. Pept_C1. 1 hit.
[Graphical view]
PROSITEiPS00640. THIOL_PROTEASE_ASN. 1 hit.
PS00639. THIOL_PROTEASE_HIS. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRDL6_ARATH
AccessioniPrimary (citable) accession number: F4JNL3
Secondary accession number(s): O81748
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 8, 2016
Last sequence update: June 28, 2011
Last modified: November 30, 2016
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Peptidase families
    Classification of peptidase families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.